miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 240787 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 240119 0.66 0.969676
Target:  5'- gGUGgGCGUGCggucGUcCCGGCGggcGCGgaaaGCg -3'
miRNA:   3'- aCAUgCGUACGa---CA-GGCCGC---UGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 240063 0.67 0.940109
Target:  5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3'
miRNA:   3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 239783 0.68 0.935433
Target:  5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3'
miRNA:   3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 239466 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 239369 0.68 0.925404
Target:  5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3'
miRNA:   3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 233604 0.68 0.925404
Target:  5'- --gGCGcCAUGaucUCCGGCGGgGUGCu -3'
miRNA:   3'- acaUGC-GUACgacAGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 233484 0.71 0.822635
Target:  5'- --gACGCAaGCUGUaCGGUGGCG-GCg -3'
miRNA:   3'- acaUGCGUaCGACAgGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 228736 0.68 0.930532
Target:  5'- gGgcUGCGUGgUGagCaGCGGCGUGCg -3'
miRNA:   3'- aCauGCGUACgACagGcCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 224679 0.69 0.896391
Target:  5'- --cACGCAgcgcCUGgCCGGCGAgGUGUa -3'
miRNA:   3'- acaUGCGUac--GACaGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 223837 0.7 0.869255
Target:  5'- --gGCGCcUGCUGUCCcuGCGGC-UGCu -3'
miRNA:   3'- acaUGCGuACGACAGGc-CGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 223292 0.66 0.977439
Target:  5'- cGUcgGCGUGCUGgCCGuGCGAcCG-GCg -3'
miRNA:   3'- aCAugCGUACGACaGGC-CGCU-GCaCG- -5'
13967 5' -55.3 NC_003521.1 + 220334 0.7 0.868534
Target:  5'- gUGUACGCgcugcugGUGCUGUCCuuccuGGCGuuG-GCg -3'
miRNA:   3'- -ACAUGCG-------UACGACAGG-----CCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 216606 0.68 0.925404
Target:  5'- --aGCGCGUGCUGgaucuaCUGGCGcuACGaGCg -3'
miRNA:   3'- acaUGCGUACGACa-----GGCCGC--UGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 213116 0.66 0.969676
Target:  5'- --gACGCGcUGg-GUgUGGCGugGUGCg -3'
miRNA:   3'- acaUGCGU-ACgaCAgGCCGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 211668 0.69 0.887943
Target:  5'- aUGUGCGCcgGCUGcugcacgagagCCGGCGccugacggccuacuACGUGa -3'
miRNA:   3'- -ACAUGCGuaCGACa----------GGCCGC--------------UGCACg -5'
13967 5' -55.3 NC_003521.1 + 207175 0.7 0.849871
Target:  5'- gGUcaACGCggugaucuucacaugGUGCUG-CUGuGCGGCGUGCg -3'
miRNA:   3'- aCA--UGCG---------------UACGACaGGC-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 201947 0.68 0.925404
Target:  5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3'
miRNA:   3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 201849 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 201533 0.68 0.935433
Target:  5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3'
miRNA:   3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.