miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 201252 0.67 0.940109
Target:  5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3'
miRNA:   3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 200529 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 194919 0.77 0.488647
Target:  5'- uUGUGCGCAUGCUGgugCuCGGCGuCGUc- -3'
miRNA:   3'- -ACAUGCGUACGACa--G-GCCGCuGCAcg -5'
13967 5' -55.3 NC_003521.1 + 191256 0.7 0.846774
Target:  5'- aGUGCGcCGUGCagacggccGUCCaGGUGGCgGUGCa -3'
miRNA:   3'- aCAUGC-GUACGa-------CAGG-CCGCUG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 190629 0.71 0.820137
Target:  5'- --gACGUcggaggagacggagAUGCUGcCCGGCG-CGUGCc -3'
miRNA:   3'- acaUGCG--------------UACGACaGGCCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 187579 0.69 0.889925
Target:  5'- gGUGCGC-UGUUGUCCGacGCGGCc-GCu -3'
miRNA:   3'- aCAUGCGuACGACAGGC--CGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 167018 0.66 0.966709
Target:  5'- --cACGCGccGCUGUCUGGCgGGCGa-- -3'
miRNA:   3'- acaUGCGUa-CGACAGGCCG-CUGCacg -5'
13967 5' -55.3 NC_003521.1 + 167006 0.68 0.935433
Target:  5'- aGUugGCGUagaagguccgGUUG-CCGGCGACGaUGa -3'
miRNA:   3'- aCAugCGUA----------CGACaGGCCGCUGC-ACg -5'
13967 5' -55.3 NC_003521.1 + 165925 0.71 0.805712
Target:  5'- cUGgACGCAUGgUG-CCaGcGCGGCGUGCu -3'
miRNA:   3'- -ACaUGCGUACgACaGG-C-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 163815 0.67 0.960172
Target:  5'- ---cCGCAUGCUGcccCUGGaCGGCG-GCg -3'
miRNA:   3'- acauGCGUACGACa--GGCC-GCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 161038 0.66 0.977439
Target:  5'- ---cCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acauGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 160773 0.7 0.846774
Target:  5'- --cGCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acaUGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 155653 0.66 0.972449
Target:  5'- --aGCGcCGUGCUGggUGGCGGCGgagGUc -3'
miRNA:   3'- acaUGC-GUACGACagGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 155496 0.7 0.838903
Target:  5'- gGgcCGCAcgaaGCgGUCCacguaGGCGACGUGCu -3'
miRNA:   3'- aCauGCGUa---CGaCAGG-----CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 154735 0.69 0.908074
Target:  5'- --gGCGCcgGCgGUgCCGGUGaccaacaGCGUGCg -3'
miRNA:   3'- acaUGCGuaCGaCA-GGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 153366 0.69 0.90264
Target:  5'- cGU-CGCGcGCgc-CCGGCGGCGUGg -3'
miRNA:   3'- aCAuGCGUaCGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 152902 0.66 0.977439
Target:  5'- cGUgcACGCgGUGCUcccagGUCUGGUucaGCGUGCg -3'
miRNA:   3'- aCA--UGCG-UACGA-----CAGGCCGc--UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 151792 0.66 0.966709
Target:  5'- gGUACaGCAUGaaGguggCCGGC-ACGUGUu -3'
miRNA:   3'- aCAUG-CGUACgaCa---GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 151433 0.75 0.594763
Target:  5'- cGUGCGCGUGCguaccGUgCGGCGACagGUGa -3'
miRNA:   3'- aCAUGCGUACGa----CAgGCCGCUG--CACg -5'
13967 5' -55.3 NC_003521.1 + 150694 0.69 0.889925
Target:  5'- cUGggUGC-UGCUGcgCCGGCGGCGacugGCu -3'
miRNA:   3'- -ACauGCGuACGACa-GGCCGCUGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.