Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13967 | 5' | -55.3 | NC_003521.1 | + | 150651 | 0.76 | 0.536008 |
Target: 5'- cGUGCGCGacgaaggcgGCUcUCCGGCGGCG-GCg -3' miRNA: 3'- aCAUGCGUa--------CGAcAGGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 150559 | 0.71 | 0.814252 |
Target: 5'- gGUGCGgGUGgUGg-CGGCGGCGgcgGCg -3' miRNA: 3'- aCAUGCgUACgACagGCCGCUGCa--CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 149756 | 0.68 | 0.920051 |
Target: 5'- aGUcGCGCAgcgGCgucUGUCCGGCGAagccGCg -3' miRNA: 3'- aCA-UGCGUa--CG---ACAGGCCGCUgca-CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 149618 | 0.71 | 0.814252 |
Target: 5'- -aUGCGCGaaacggcGCUGgacgccgCCGGCGAgGUGCu -3' miRNA: 3'- acAUGCGUa------CGACa------GGCCGCUgCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 148385 | 0.73 | 0.713469 |
Target: 5'- gGUGCGCGUGUUGaCgCGGuCcACGUGCg -3' miRNA: 3'- aCAUGCGUACGACaG-GCC-GcUGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 147975 | 0.67 | 0.940109 |
Target: 5'- cGUGCGCAcgggucacauggUGCUGgCCGuguuCGugGUGUa -3' miRNA: 3'- aCAUGCGU------------ACGACaGGCc---GCugCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 146176 | 0.67 | 0.9528 |
Target: 5'- gGgcCGCGaguUGCUGgCCGGCgGACG-GCc -3' miRNA: 3'- aCauGCGU---ACGACaGGCCG-CUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 145853 | 0.68 | 0.920051 |
Target: 5'- --aACGCGUcuCUGggcCCGGCGGCGgGCg -3' miRNA: 3'- acaUGCGUAc-GACa--GGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 143826 | 0.67 | 0.956593 |
Target: 5'- cGUGCccgccagcgaugGCGgcUGCUGcucgucgCCGGCGGCGcGCg -3' miRNA: 3'- aCAUG------------CGU--ACGACa------GGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 143538 | 0.68 | 0.914471 |
Target: 5'- --cACGCGcGCcG-CCGGCGACGaGCa -3' miRNA: 3'- acaUGCGUaCGaCaGGCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138911 | 0.68 | 0.925404 |
Target: 5'- aGUACGCcgGCucggUGUCggaccaCGGCGGC-UGCu -3' miRNA: 3'- aCAUGCGuaCG----ACAG------GCCGCUGcACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138854 | 0.67 | 0.9528 |
Target: 5'- cGUAC--AUGgUGUCCGGCGAgaUGCc -3' miRNA: 3'- aCAUGcgUACgACAGGCCGCUgcACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138453 | 0.7 | 0.845995 |
Target: 5'- --cGCGCGUGCaucgCCGGCGGCGccacaucUGCc -3' miRNA: 3'- acaUGCGUACGaca-GGCCGCUGC-------ACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138331 | 0.66 | 0.966709 |
Target: 5'- --aGCGCcucaGCUGUCCG-CGGCGgucGCg -3' miRNA: 3'- acaUGCGua--CGACAGGCcGCUGCa--CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 138021 | 0.76 | 0.555408 |
Target: 5'- gGUGCGCGUGCgucgcugCCGGCGcACGggGCu -3' miRNA: 3'- aCAUGCGUACGaca----GGCCGC-UGCa-CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 137960 | 0.66 | 0.963543 |
Target: 5'- --aGCGCGUGUgguaugCCGaCGugGUGCg -3' miRNA: 3'- acaUGCGUACGaca---GGCcGCugCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 137483 | 0.71 | 0.820137 |
Target: 5'- --gGCGCcgGCgUGUCgCGGCGccgcgaggucugggACGUGCa -3' miRNA: 3'- acaUGCGuaCG-ACAG-GCCGC--------------UGCACG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 135740 | 0.7 | 0.838903 |
Target: 5'- aUGUGCGCGccacUGC-GUCCGcGuCGACGggggGCg -3' miRNA: 3'- -ACAUGCGU----ACGaCAGGC-C-GCUGCa---CG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 134521 | 0.66 | 0.970808 |
Target: 5'- -aUGCGCAcggccgccgccugguUGCUGUUgcccuccaCGGCGAUGcGCa -3' miRNA: 3'- acAUGCGU---------------ACGACAG--------GCCGCUGCaCG- -5' |
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13967 | 5' | -55.3 | NC_003521.1 | + | 133645 | 0.71 | 0.822635 |
Target: 5'- --aGCGCGgaccgccgcGCUGUgCCGGCGGacCGUGCu -3' miRNA: 3'- acaUGCGUa--------CGACA-GGCCGCU--GCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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