miRNA display CGI


Results 41 - 60 of 129 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 150651 0.76 0.536008
Target:  5'- cGUGCGCGacgaaggcgGCUcUCCGGCGGCG-GCg -3'
miRNA:   3'- aCAUGCGUa--------CGAcAGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 150559 0.71 0.814252
Target:  5'- gGUGCGgGUGgUGg-CGGCGGCGgcgGCg -3'
miRNA:   3'- aCAUGCgUACgACagGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 149756 0.68 0.920051
Target:  5'- aGUcGCGCAgcgGCgucUGUCCGGCGAagccGCg -3'
miRNA:   3'- aCA-UGCGUa--CG---ACAGGCCGCUgca-CG- -5'
13967 5' -55.3 NC_003521.1 + 149618 0.71 0.814252
Target:  5'- -aUGCGCGaaacggcGCUGgacgccgCCGGCGAgGUGCu -3'
miRNA:   3'- acAUGCGUa------CGACa------GGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 148385 0.73 0.713469
Target:  5'- gGUGCGCGUGUUGaCgCGGuCcACGUGCg -3'
miRNA:   3'- aCAUGCGUACGACaG-GCC-GcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 147975 0.67 0.940109
Target:  5'- cGUGCGCAcgggucacauggUGCUGgCCGuguuCGugGUGUa -3'
miRNA:   3'- aCAUGCGU------------ACGACaGGCc---GCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 146176 0.67 0.9528
Target:  5'- gGgcCGCGaguUGCUGgCCGGCgGACG-GCc -3'
miRNA:   3'- aCauGCGU---ACGACaGGCCG-CUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 145853 0.68 0.920051
Target:  5'- --aACGCGUcuCUGggcCCGGCGGCGgGCg -3'
miRNA:   3'- acaUGCGUAc-GACa--GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 143826 0.67 0.956593
Target:  5'- cGUGCccgccagcgaugGCGgcUGCUGcucgucgCCGGCGGCGcGCg -3'
miRNA:   3'- aCAUG------------CGU--ACGACa------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 143538 0.68 0.914471
Target:  5'- --cACGCGcGCcG-CCGGCGACGaGCa -3'
miRNA:   3'- acaUGCGUaCGaCaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 138911 0.68 0.925404
Target:  5'- aGUACGCcgGCucggUGUCggaccaCGGCGGC-UGCu -3'
miRNA:   3'- aCAUGCGuaCG----ACAG------GCCGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 138854 0.67 0.9528
Target:  5'- cGUAC--AUGgUGUCCGGCGAgaUGCc -3'
miRNA:   3'- aCAUGcgUACgACAGGCCGCUgcACG- -5'
13967 5' -55.3 NC_003521.1 + 138453 0.7 0.845995
Target:  5'- --cGCGCGUGCaucgCCGGCGGCGccacaucUGCc -3'
miRNA:   3'- acaUGCGUACGaca-GGCCGCUGC-------ACG- -5'
13967 5' -55.3 NC_003521.1 + 138331 0.66 0.966709
Target:  5'- --aGCGCcucaGCUGUCCG-CGGCGgucGCg -3'
miRNA:   3'- acaUGCGua--CGACAGGCcGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 138021 0.76 0.555408
Target:  5'- gGUGCGCGUGCgucgcugCCGGCGcACGggGCu -3'
miRNA:   3'- aCAUGCGUACGaca----GGCCGC-UGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 137960 0.66 0.963543
Target:  5'- --aGCGCGUGUgguaugCCGaCGugGUGCg -3'
miRNA:   3'- acaUGCGUACGaca---GGCcGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 137483 0.71 0.820137
Target:  5'- --gGCGCcgGCgUGUCgCGGCGccgcgaggucugggACGUGCa -3'
miRNA:   3'- acaUGCGuaCG-ACAG-GCCGC--------------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 135740 0.7 0.838903
Target:  5'- aUGUGCGCGccacUGC-GUCCGcGuCGACGggggGCg -3'
miRNA:   3'- -ACAUGCGU----ACGaCAGGC-C-GCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 134521 0.66 0.970808
Target:  5'- -aUGCGCAcggccgccgccugguUGCUGUUgcccuccaCGGCGAUGcGCa -3'
miRNA:   3'- acAUGCGU---------------ACGACAG--------GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 133645 0.71 0.822635
Target:  5'- --aGCGCGgaccgccgcGCUGUgCCGGCGGacCGUGCu -3'
miRNA:   3'- acaUGCGUa--------CGACA-GGCCGCU--GCACG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.