miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 222367 0.71 0.787369
Target:  5'- -aGCGCCUcGAGAcGCuGCCGGCGCUg -3'
miRNA:   3'- gaCGCGGAcCUCU-UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 164409 0.71 0.787369
Target:  5'- aCUGCGaggacgCUGGGGGACAGCgGAUuCCUg -3'
miRNA:   3'- -GACGCg-----GACCUCUUGUUGgCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 233721 0.71 0.796248
Target:  5'- -aGCgGCCUGGAGAAgGaggacGCCGcCGCCg -3'
miRNA:   3'- gaCG-CGGACCUCUUgU-----UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 54585 0.71 0.796248
Target:  5'- gUGCGCCUGGugacGGAGCA--CGACGCgCUg -3'
miRNA:   3'- gACGCGGACC----UCUUGUugGCUGUG-GA- -5'
13968 3' -55.5 NC_003521.1 + 172597 0.71 0.804987
Target:  5'- gUGUGCCac-AGGACGGCCGAgGCCUg -3'
miRNA:   3'- gACGCGGaccUCUUGUUGGCUgUGGA- -5'
13968 3' -55.5 NC_003521.1 + 127525 0.7 0.813576
Target:  5'- -cGCGCCUGGGcgccauGGACG-CCGACgaGCCg -3'
miRNA:   3'- gaCGCGGACCU------CUUGUuGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 129308 0.7 0.813576
Target:  5'- gCUGCGCgCgcucaAGAACAcgGCCGACGCCa -3'
miRNA:   3'- -GACGCG-Gacc--UCUUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 70857 0.7 0.821172
Target:  5'- -cGCGCCUcccaggaGGAGAGCAACgaCGACAUa- -3'
miRNA:   3'- gaCGCGGA-------CCUCUUGUUG--GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 153641 0.7 0.822008
Target:  5'- cCUGCGCUacGAcGGGCuguGCCGGCACCa -3'
miRNA:   3'- -GACGCGGacCU-CUUGu--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 55214 0.7 0.822008
Target:  5'- gUGCGCUcaaGGAGAACAccACCGuCACUUu -3'
miRNA:   3'- gACGCGGa--CCUCUUGU--UGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 128575 0.7 0.830275
Target:  5'- -cGCgGCUacaccacggUGGAGAGCAagcucaagcugACCGACACCa -3'
miRNA:   3'- gaCG-CGG---------ACCUCUUGU-----------UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 201007 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 193244 0.7 0.83837
Target:  5'- -aGCGCCUGGGGuaccccggauACggUCGGCugCg -3'
miRNA:   3'- gaCGCGGACCUCu---------UGuuGGCUGugGa -5'
13968 3' -55.5 NC_003521.1 + 79132 0.7 0.83837
Target:  5'- -cGCGCCUGGucauCGACCGGCggaucACCa -3'
miRNA:   3'- gaCGCGGACCucuuGUUGGCUG-----UGGa -5'
13968 3' -55.5 NC_003521.1 + 146402 0.7 0.83837
Target:  5'- -cGCGCUcgcGGAaAAUGGCCGACACCa -3'
miRNA:   3'- gaCGCGGa--CCUcUUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 240308 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 163727 0.7 0.846286
Target:  5'- cCUGCGUCgGGAuGAGCGgcGCCGGCGgCa -3'
miRNA:   3'- -GACGCGGaCCU-CUUGU--UGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 156619 0.7 0.846286
Target:  5'- -cGCGCCUGGu--GCuGCgCGACGCCc -3'
miRNA:   3'- gaCGCGGACCucuUGuUG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 217703 0.7 0.854017
Target:  5'- -cGCaCCUGGAGAGC-ACCGuguuccugugcuGCACCg -3'
miRNA:   3'- gaCGcGGACCUCUUGuUGGC------------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 117550 0.7 0.854017
Target:  5'- -aGCGUgaGGGGA---GCCGGCACCa -3'
miRNA:   3'- gaCGCGgaCCUCUuguUGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.