miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 122171 0.72 0.577904
Target:  5'- cCCACggGCCgGGCCAUCUGCCccaGCCagGAg -3'
miRNA:   3'- -GGUGgaUGG-CCGGUAGGCGG---UGGa-CU- -5'
13968 5' -59.1 NC_003521.1 + 114227 0.72 0.587488
Target:  5'- gCCGCCUGCCGuCUGUCUGCCuCCUc- -3'
miRNA:   3'- -GGUGGAUGGCcGGUAGGCGGuGGAcu -5'
13968 5' -59.1 NC_003521.1 + 142505 0.72 0.587488
Target:  5'- aCCACCgucgUGGCCG-CCGCCACCa-- -3'
miRNA:   3'- -GGUGGaug-GCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 26192 0.72 0.597102
Target:  5'- gCCGCCUGCaaGCaCAUCUuggauuuuGCCACCUGGc -3'
miRNA:   3'- -GGUGGAUGgcCG-GUAGG--------CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 28247 0.72 0.597102
Target:  5'- cUCACgCUGCCgccguGGCCGUgagCGCCGCCUGGc -3'
miRNA:   3'- -GGUG-GAUGG-----CCGGUAg--GCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 130102 0.72 0.597102
Target:  5'- gCCAgCUGCCgGGCCucuUCUGCC-CCUGc -3'
miRNA:   3'- -GGUgGAUGG-CCGGu--AGGCGGuGGACu -5'
13968 5' -59.1 NC_003521.1 + 223801 0.71 0.606738
Target:  5'- gCCGCCagacgACgGGCCugcgCCGCCGCCa-- -3'
miRNA:   3'- -GGUGGa----UGgCCGGua--GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 102236 0.71 0.61446
Target:  5'- aCCGCCUGCUGGaccCCAUCuCGCaccccgagaacaGCCUGGa -3'
miRNA:   3'- -GGUGGAUGGCC---GGUAG-GCGg-----------UGGACU- -5'
13968 5' -59.1 NC_003521.1 + 38925 0.71 0.615425
Target:  5'- gCCGCCUGCuguuCGGUCAUCgGCgguguggUACCUGAg -3'
miRNA:   3'- -GGUGGAUG----GCCGGUAGgCG-------GUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 73244 0.71 0.616391
Target:  5'- aCCGCC-GCgGGCuCGUCgGCUACUUGAu -3'
miRNA:   3'- -GGUGGaUGgCCG-GUAGgCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 121035 0.71 0.623155
Target:  5'- uUCACCUggccccaguggcagGCCGG-CAUCCaggcgcGCCACCUGGu -3'
miRNA:   3'- -GGUGGA--------------UGGCCgGUAGG------CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 164446 0.71 0.623155
Target:  5'- gCCACCgcgGCCgcGGCCGUcacggucgccgcugCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGa--UGG--CCGGUA--------------GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 52507 0.71 0.625089
Target:  5'- aCCGCCUGCCGcugcccaacuguaGCCcgCCGCCcuACCg-- -3'
miRNA:   3'- -GGUGGAUGGC-------------CGGuaGGCGG--UGGacu -5'
13968 5' -59.1 NC_003521.1 + 27467 0.71 0.626055
Target:  5'- gCGCCagGCUGGCCAggUCCGUCAUgUGGc -3'
miRNA:   3'- gGUGGa-UGGCCGGU--AGGCGGUGgACU- -5'
13968 5' -59.1 NC_003521.1 + 232969 0.71 0.626055
Target:  5'- uCC-CCaUGgaGGCCGUCCGCCACCc-- -3'
miRNA:   3'- -GGuGG-AUggCCGGUAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 147725 0.71 0.626055
Target:  5'- aCgGCCUGUCGcGCCAUCCGCUACUUc- -3'
miRNA:   3'- -GgUGGAUGGC-CGGUAGGCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 218769 0.71 0.626055
Target:  5'- uCUGCCUGCUGGCCugGUUCGCCuuuCCcGAc -3'
miRNA:   3'- -GGUGGAUGGCCGG--UAGGCGGu--GGaCU- -5'
13968 5' -59.1 NC_003521.1 + 128842 0.71 0.634756
Target:  5'- aUCGCCUACCacuccauccuGGCCGacuucaacUCCuacaaggGCCACCUGAc -3'
miRNA:   3'- -GGUGGAUGG----------CCGGU--------AGG-------CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 213884 0.71 0.635723
Target:  5'- uCCugCUGCgCGGCgA-CCGCCACCc-- -3'
miRNA:   3'- -GGugGAUG-GCCGgUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 28525 0.71 0.644422
Target:  5'- aCGCCUgcgugcccauGCCGGCC-UUCGCCcuggccaGCCUGGu -3'
miRNA:   3'- gGUGGA----------UGGCCGGuAGGCGG-------UGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.