miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 88017 0.65 0.985688
Target:  5'- -gAGCUGUaccaccuGC-CGgUGACCGAGGcgguGCg -3'
miRNA:   3'- cgUCGACA-------CGuGCaACUGGCUCCu---CG- -5'
13969 5' -54.4 NC_003521.1 + 200239 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 11 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 240560 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 145031 0.66 0.984135
Target:  5'- cGC-GCUGgauCGCG-UGGCCGAGcGGCa -3'
miRNA:   3'- -CGuCGACac-GUGCaACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 53587 0.66 0.984135
Target:  5'- cCGGCacccaUGCugG-UGGCCGAaggGGAGCg -3'
miRNA:   3'- cGUCGac---ACGugCaACUGGCU---CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 196672 0.66 0.984135
Target:  5'- cCAGCUGcUGCucgacgacgGCGUcGGagGAGGAGCa -3'
miRNA:   3'- cGUCGAC-ACG---------UGCAaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 148878 0.66 0.982264
Target:  5'- cCAGcCUGgccucgGC-CGUggccgacGCCGAGGAGCg -3'
miRNA:   3'- cGUC-GACa-----CGuGCAac-----UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 102659 0.66 0.982264
Target:  5'- aGCGGCUGUcggGCACGUgcuUGAgcaggUCGaAGGGGa -3'
miRNA:   3'- -CGUCGACA---CGUGCA---ACU-----GGC-UCCUCg -5'
13969 5' -54.4 NC_003521.1 + 236476 0.66 0.982264
Target:  5'- aGCGGCgaaccgGUcCGUccgaGACCGAGGAGg -3'
miRNA:   3'- -CGUCGaca---CGuGCAa---CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 150628 0.66 0.982264
Target:  5'- gGCGGCUGcUGCGCa--GGCgGGGGcguGCg -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaCUGgCUCCu--CG- -5'
13969 5' -54.4 NC_003521.1 + 186954 0.66 0.982264
Target:  5'- cGCAGCaggcacucGUaCACGccGGCCGAGGAcGCc -3'
miRNA:   3'- -CGUCGa-------CAcGUGCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 172379 0.66 0.982264
Target:  5'- --uGCUGaccgGCACGc-GGuuGAGGGGCg -3'
miRNA:   3'- cguCGACa---CGUGCaaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 190373 0.66 0.982264
Target:  5'- cGCGGCUuucgGCucCGUccaccGCUGAGGAGCg -3'
miRNA:   3'- -CGUCGAca--CGu-GCAac---UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 60547 0.66 0.98187
Target:  5'- uGCuGCUcaacGUGCGCGccuacuucccccUGcgguacACCGAGGAGCa -3'
miRNA:   3'- -CGuCGA----CACGUGCa-----------AC------UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 79196 0.66 0.981671
Target:  5'- gGUGGCgccgaagaaacgcaGCACGUUGcCCGAGG-GCa -3'
miRNA:   3'- -CGUCGaca-----------CGUGCAACuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 12913 0.66 0.980231
Target:  5'- aCAGcCUGgcGCugGUggcggGACCagggccggGAGGAGCa -3'
miRNA:   3'- cGUC-GACa-CGugCAa----CUGG--------CUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 180660 0.66 0.980231
Target:  5'- aGCGGCUccagGCGUUGGCgCGAGGccuGCg -3'
miRNA:   3'- -CGUCGAcacgUGCAACUG-GCUCCu--CG- -5'
13969 5' -54.4 NC_003521.1 + 38814 0.66 0.980231
Target:  5'- cGCAGCagGUGuCAagguagguuuaGUUGACUGugcguaAGGAGCg -3'
miRNA:   3'- -CGUCGa-CAC-GUg----------CAACUGGC------UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 212808 0.66 0.980231
Target:  5'- cGCGGC-GUGCugGaggagGACagCGAGGuGCc -3'
miRNA:   3'- -CGUCGaCACGugCaa---CUG--GCUCCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.