miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 33946 0.7 0.903348
Target:  5'- uGCGGC-GUGCGCGgcGAgCagcuGGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCaaCUgGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 221645 0.7 0.897076
Target:  5'- uGCAGCUcGUGCACGUcGGCCacc-AGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCAaCUGGcuccUCG- -5'
13969 5' -54.4 NC_003521.1 + 110482 0.72 0.79707
Target:  5'- uGCGGCc--GCACGUUGAgcCCGAaGAGCa -3'
miRNA:   3'- -CGUCGacaCGUGCAACU--GGCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 38469 0.77 0.563386
Target:  5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3'
miRNA:   3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 86442 0.68 0.945333
Target:  5'- -uGGCg--GCAgCGgcGACCGAGGAcGCg -3'
miRNA:   3'- cgUCGacaCGU-GCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 92044 0.69 0.931307
Target:  5'- cGCGGCUccucgGCGCGaccGCCGAGG-GCa -3'
miRNA:   3'- -CGUCGAca---CGUGCaacUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 156885 0.7 0.883869
Target:  5'- gGCGGCcGcUGCcCGaUGGCaCGGGGGGCg -3'
miRNA:   3'- -CGUCGaC-ACGuGCaACUG-GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 87260 0.77 0.537897
Target:  5'- aGCGGCUGUGCGcCGUgcgcguggccaacgGGcCCGAGGuGCg -3'
miRNA:   3'- -CGUCGACACGU-GCAa-------------CU-GGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 196692 0.69 0.926174
Target:  5'- cGCGGCUGuUGCGguagugGUUGGCC-AGGAuGCa -3'
miRNA:   3'- -CGUCGAC-ACGUg-----CAACUGGcUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 46378 0.81 0.365388
Target:  5'- cGCGGCUGUgagggGCGCGggGugCGuGGGGCg -3'
miRNA:   3'- -CGUCGACA-----CGUGCaaCugGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 148382 0.7 0.890581
Target:  5'- -gAGCgggGUGCGgGgaGGCUGGGGGGUg -3'
miRNA:   3'- cgUCGa--CACGUgCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 90836 0.7 0.905794
Target:  5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3'
miRNA:   3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 91970 0.71 0.829513
Target:  5'- cGUAGCUggcgcgGUGCACGgcacgcaccucGGCCGAGG-GCa -3'
miRNA:   3'- -CGUCGA------CACGUGCaa---------CUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 208861 0.72 0.805826
Target:  5'- uGCGGCUGgacgGCACcauGUgccuguuccUGGaccCCGAGGAGCg -3'
miRNA:   3'- -CGUCGACa---CGUG---CA---------ACU---GGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 136030 0.73 0.741819
Target:  5'- uCAGCgagGUG-GCGgUGAUCGAGGGGCa -3'
miRNA:   3'- cGUCGa--CACgUGCaACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 86866 0.76 0.580228
Target:  5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3'
miRNA:   3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 100367 0.68 0.953554
Target:  5'- cGCGGacggGUgacggggacgGCACGgaGGCCGGGGAGa -3'
miRNA:   3'- -CGUCga--CA----------CGUGCaaCUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 123061 0.68 0.945333
Target:  5'- uGCuGCUGgGacgGCGgcGGCgGAGGAGCu -3'
miRNA:   3'- -CGuCGACaCg--UGCaaCUGgCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 233386 0.68 0.940885
Target:  5'- uGguGCUGUGCgccGCGUccgUGAUgGAacacaGGGGCa -3'
miRNA:   3'- -CguCGACACG---UGCA---ACUGgCU-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 100890 0.68 0.936211
Target:  5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3'
miRNA:   3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.