miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 208828 1.13 0.003439
Target:  5'- gGCAGCUGUGCACGUUGACCGAGGAGCu -3'
miRNA:   3'- -CGUCGACACGUGCAACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 109677 0.68 0.936211
Target:  5'- aGCGGCgGaUGCGauc-GGCCGAGGGGUc -3'
miRNA:   3'- -CGUCGaC-ACGUgcaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 87161 0.68 0.936211
Target:  5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 89628 0.7 0.903348
Target:  5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3'
miRNA:   3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 68191 0.72 0.814431
Target:  5'- -aAGCggggGCGCGUgagGACCGAGGAcGUg -3'
miRNA:   3'- cgUCGaca-CGUGCAa--CUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 74995 0.68 0.953554
Target:  5'- -gAGCggGUGCGCGUagUGAUCGuGG-GCc -3'
miRNA:   3'- cgUCGa-CACGUGCA--ACUGGCuCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 95554 0.68 0.940885
Target:  5'- cGCgAGCUG-GC-CGccgaGGCCGAGGAGg -3'
miRNA:   3'- -CG-UCGACaCGuGCaa--CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 197785 0.73 0.751309
Target:  5'- cGCAGCUGUGC-CGUgaagaccagcUGGuuGAaGAGCg -3'
miRNA:   3'- -CGUCGACACGuGCA----------ACUggCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 177755 0.69 0.909396
Target:  5'- cGCAGCUGUacggggucgcGguCGUcgccagGGCCGAcGGGGCc -3'
miRNA:   3'- -CGUCGACA----------CguGCAa-----CUGGCU-CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 33946 0.7 0.903348
Target:  5'- uGCGGC-GUGCGCGgcGAgCagcuGGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCaaCUgGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 17154 0.74 0.693165
Target:  5'- aGCAGCg--GCGCGa-GGCCGAGGcGCa -3'
miRNA:   3'- -CGUCGacaCGUGCaaCUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 14760 0.75 0.633248
Target:  5'- cGCGGCcGggGCGCGccuucgUGGCCGAGGuGCu -3'
miRNA:   3'- -CGUCGaCa-CGUGCa-----ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 40739 0.68 0.957334
Target:  5'- uGCAGCUGUGUGC--UGG-CGAGGccaAGCc -3'
miRNA:   3'- -CGUCGACACGUGcaACUgGCUCC---UCG- -5'
13969 5' -54.4 NC_003521.1 + 155173 0.68 0.953554
Target:  5'- aCAGCUGgcgGcCGCGgcuGCCGGGGGGg -3'
miRNA:   3'- cGUCGACa--C-GUGCaacUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 100890 0.68 0.936211
Target:  5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3'
miRNA:   3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 190567 0.71 0.831155
Target:  5'- uGCAGCggcaGUACGgcgUGAUCGAGG-GCg -3'
miRNA:   3'- -CGUCGaca-CGUGCa--ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 177545 0.72 0.822876
Target:  5'- aGCAGCUGcUGCACccgGucGCCGAGGAa- -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaC--UGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 86866 0.76 0.580228
Target:  5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3'
miRNA:   3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 195170 0.7 0.903348
Target:  5'- aGCGGgUGUGCGCcg-GACCccgcGGAGCc -3'
miRNA:   3'- -CGUCgACACGUGcaaCUGGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 165851 0.69 0.915217
Target:  5'- gGCAGgUGUGCugGcgGugCGAGuggaaguugaaGGGCa -3'
miRNA:   3'- -CGUCgACACGugCaaCugGCUC-----------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.