miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 223188 0.71 0.949002
Target:  5'- uGGCGuACGUagcUCCGcAGCGCGUCggGGu -3'
miRNA:   3'- gCCGUuUGCA---AGGU-UCGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 27457 0.71 0.949002
Target:  5'- uCGGCcguGAGCG--CCAGGCugGCCA-GGu -3'
miRNA:   3'- -GCCG---UUUGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 40473 0.71 0.949002
Target:  5'- aCGGaUAGAUGUgUCCGcGGCGCGCCAcGGc -3'
miRNA:   3'- -GCC-GUUUGCA-AGGU-UCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 7095 0.71 0.953085
Target:  5'- gCGGCGgcGGCGUccuccuucUCCAGGC-CGCUgagGUGGa -3'
miRNA:   3'- -GCCGU--UUGCA--------AGGUUCGuGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 56032 0.7 0.956942
Target:  5'- gCGGCcaccaGGGCG-UCCAGGCGCGCguUGc -3'
miRNA:   3'- -GCCG-----UUUGCaAGGUUCGUGCGguACc -5'
13971 3' -51.8 NC_003521.1 + 237178 0.7 0.956942
Target:  5'- aGGCAGACGgcggcggCCGuGGCACGCUAg-- -3'
miRNA:   3'- gCCGUUUGCaa-----GGU-UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 12527 0.7 0.956942
Target:  5'- cCGGCcGGCGuUUCCAcuu-CGCCGUGGa -3'
miRNA:   3'- -GCCGuUUGC-AAGGUucguGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 65376 0.7 0.960223
Target:  5'- aCGGCGcgccgccGAuCGUacgCCGAGCACGCCAc-- -3'
miRNA:   3'- -GCCGU-------UU-GCAa--GGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 30912 0.7 0.960577
Target:  5'- gCGGCAGGCGagagcggUCCuggGGCAguCGCCGUGc -3'
miRNA:   3'- -GCCGUUUGCa------AGGu--UCGU--GCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 89032 0.7 0.960577
Target:  5'- aCGGCGGugaGUUCCucGC-CGCuCAUGGu -3'
miRNA:   3'- -GCCGUUug-CAAGGuuCGuGCG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 46521 0.7 0.960577
Target:  5'- uGGCAcacgGGCGUcuucUCCAGGCGCaCCA-GGg -3'
miRNA:   3'- gCCGU----UUGCA----AGGUUCGUGcGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 126532 0.7 0.963662
Target:  5'- aGGCGAGCGcagCCAGcugugguacucguGCGCgaagGCCGUGGg -3'
miRNA:   3'- gCCGUUUGCaa-GGUU-------------CGUG----CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 70736 0.7 0.963994
Target:  5'- cCGGCAcuuCG-UCCAgcugcAGCGCGCCGcGGc -3'
miRNA:   3'- -GCCGUuu-GCaAGGU-----UCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 194158 0.7 0.963994
Target:  5'- uCGGCGGGCgGUUCCAu---CGCCcgGGu -3'
miRNA:   3'- -GCCGUUUG-CAAGGUucguGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 130917 0.7 0.963994
Target:  5'- aGGCAacacGACGcugUCCuaccccCGCGCCGUGGa -3'
miRNA:   3'- gCCGU----UUGCa--AGGuuc---GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 116010 0.7 0.967198
Target:  5'- aGGagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- gCCgu-UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 213029 0.7 0.967198
Target:  5'- gGGCGAGCcggCCGAGCGgGCCGg-- -3'
miRNA:   3'- gCCGUUUGcaaGGUUCGUgCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 216378 0.7 0.967198
Target:  5'- cCGcGCGGACcuGUUCCGAGCcCGCCGg-- -3'
miRNA:   3'- -GC-CGUUUG--CAAGGUUCGuGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 116004 0.7 0.967198
Target:  5'- uCGcGCAggagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- -GC-CGU-----UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 103213 0.7 0.967198
Target:  5'- gCGGUAGGCG-UCC-AGCGCGCgGUa- -3'
miRNA:   3'- -GCCGUUUGCaAGGuUCGUGCGgUAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.