Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13972 | 5' | -55.4 | NC_003521.1 | + | 201383 | 0.66 | 0.962644 |
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Target: 5'- cGUCCccgggaGCcacggCGCCGCCUACGGGacuggacgGCCUGu -3' miRNA: 3'- -UAGG------CGa----GUGGUGGAUGCUCa-------UGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 205185 | 0.7 | 0.826734 |
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Target: 5'- -gCCGCUCGCagCGCgUGCGGG-ACCUGc -3' miRNA: 3'- uaGGCGAGUG--GUGgAUGCUCaUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 205879 | 0.66 | 0.955504 |
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Target: 5'- cUCUGCgugCGCCGCgaCUACGAGggucugcgccgcUACCUGc -3' miRNA: 3'- uAGGCGa--GUGGUG--GAUGCUC------------AUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 208306 | 1.07 | 0.006261 |
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Target: 5'- gAUCCGCUCACCACCUACGAGUACCUGg -3' miRNA: 3'- -UAGGCGAGUGGUGGAUGCUCAUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 209849 | 0.66 | 0.965897 |
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Target: 5'- gAUCCGCagCugCugCUGCgugccGAGcGCCUGg -3' miRNA: 3'- -UAGGCGa-GugGugGAUG-----CUCaUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 223822 | 0.72 | 0.736483 |
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Target: 5'- -gCCGC-CGCCACC-GCGGGcGCCUGc -3' miRNA: 3'- uaGGCGaGUGGUGGaUGCUCaUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 235903 | 0.66 | 0.951608 |
|
Target: 5'- uUCgCGCUCACaCGCCUcGCGAcu-CCUGa -3' miRNA: 3'- uAG-GCGAGUG-GUGGA-UGCUcauGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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