Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13972 | 5' | -55.4 | NC_003521.1 | + | 15121 | 0.66 | 0.955504 |
Target: 5'- gAUCCGCaCGagggCGCCUGgGAGcGCCUGg -3' miRNA: 3'- -UAGGCGaGUg---GUGGAUgCUCaUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 129915 | 0.66 | 0.955504 |
Target: 5'- -gCCGCgCGCCugCUGCGcGaacACCUGg -3' miRNA: 3'- uaGGCGaGUGGugGAUGCuCa--UGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 143532 | 0.66 | 0.955504 |
Target: 5'- gAUCCGCacgcgCGCCGCCggcgACGAGcagcaGCCg- -3' miRNA: 3'- -UAGGCGa----GUGGUGGa---UGCUCa----UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 235903 | 0.66 | 0.951608 |
Target: 5'- uUCgCGCUCACaCGCCUcGCGAcu-CCUGa -3' miRNA: 3'- uAG-GCGAGUG-GUGGA-UGCUcauGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 145091 | 0.66 | 0.951608 |
Target: 5'- -gUgGCUCAgCCGCCUGCuGG-ACCUGg -3' miRNA: 3'- uaGgCGAGU-GGUGGAUGcUCaUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 134943 | 0.66 | 0.951608 |
Target: 5'- -gCCGuCUUGCgCACCUGCGAGUugaGgCUGa -3' miRNA: 3'- uaGGC-GAGUG-GUGGAUGCUCA---UgGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 73977 | 0.66 | 0.949988 |
Target: 5'- -gCCGCgcCACCGCCUGCGuauccucaccgucGUcGCCUGg -3' miRNA: 3'- uaGGCGa-GUGGUGGAUGCu------------CA-UGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 119875 | 0.67 | 0.949164 |
Target: 5'- gGUCCGCagucgguucuccucgUCGCC-CC-GCGGGUggGCCUGg -3' miRNA: 3'- -UAGGCG---------------AGUGGuGGaUGCUCA--UGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 75328 | 0.67 | 0.94749 |
Target: 5'- -gCCGaggCGCagAgCUGCGAGUACCUGa -3' miRNA: 3'- uaGGCga-GUGg-UgGAUGCUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 111498 | 0.67 | 0.94749 |
Target: 5'- --gCGCUCaACCGCCUGCuGGGcgACCUc -3' miRNA: 3'- uagGCGAG-UGGUGGAUG-CUCa-UGGAc -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 44067 | 0.67 | 0.94749 |
Target: 5'- gAUCCGCaacCcCUACCUGCGGGUcaaGCCg- -3' miRNA: 3'- -UAGGCGa--GuGGUGGAUGCUCA---UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 163422 | 0.67 | 0.943147 |
Target: 5'- cGUCgGCUgcCGCUGCCUACcaGGGUGCCa- -3' miRNA: 3'- -UAGgCGA--GUGGUGGAUG--CUCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 187643 | 0.67 | 0.943147 |
Target: 5'- -gCCGCUgGCCAUCUucaucgGCGAGggcgGCCg- -3' miRNA: 3'- uaGGCGAgUGGUGGA------UGCUCa---UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 188502 | 0.67 | 0.938577 |
Target: 5'- gGUCCGC-CGCCGagaUACGAGgagGCCg- -3' miRNA: 3'- -UAGGCGaGUGGUgg-AUGCUCa--UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 136152 | 0.67 | 0.938577 |
Target: 5'- -gCCGC-CACCACCUGCuGGaGCCc- -3' miRNA: 3'- uaGGCGaGUGGUGGAUGcUCaUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 194270 | 0.67 | 0.933777 |
Target: 5'- -aCCGCuUCAgCACCcggcGCGAGgcCCUGg -3' miRNA: 3'- uaGGCG-AGUgGUGGa---UGCUCauGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 143454 | 0.67 | 0.933777 |
Target: 5'- -gCCGCUCgACCGCCaGCGcGUGCUc- -3' miRNA: 3'- uaGGCGAG-UGGUGGaUGCuCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 131498 | 0.67 | 0.933777 |
Target: 5'- uGUCCGaacaCACCAgCUACGugacgggcgagaAGUACCUGc -3' miRNA: 3'- -UAGGCga--GUGGUgGAUGC------------UCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 138525 | 0.68 | 0.923486 |
Target: 5'- -gCCGCgga-CGCCUacuacgacggggACGAGUACCUGa -3' miRNA: 3'- uaGGCGagugGUGGA------------UGCUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 23431 | 0.68 | 0.922947 |
Target: 5'- -gCCGCUCAgCCuggcgguGCCcACGGuGUGCCUGg -3' miRNA: 3'- uaGGCGAGU-GG-------UGGaUGCU-CAUGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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