miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13974 5' -62 NC_003521.1 + 16995 0.66 0.779765
Target:  5'- aGGgacagCagGCGCCCGC-GGUGGCGg -3'
miRNA:   3'- -CCaaggaGg-CGCGGGCGaCCACCGCa -5'
13974 5' -62 NC_003521.1 + 88072 0.66 0.777175
Target:  5'- cGUUCCgCgCGCuGCCCguggaggacaaccgGCUGGUGGCc- -3'
miRNA:   3'- cCAAGGaG-GCG-CGGG--------------CGACCACCGca -5'
13974 5' -62 NC_003521.1 + 136748 0.66 0.771094
Target:  5'- --gUCCUgCCGCGCCCGCucgagcUGcUGGCc- -3'
miRNA:   3'- ccaAGGA-GGCGCGGGCG------ACcACCGca -5'
13974 5' -62 NC_003521.1 + 134111 0.66 0.771094
Target:  5'- uGGUggccgUCCUgCGCGCCUaGCugacccugaagUGGaUGGCGUg -3'
miRNA:   3'- -CCA-----AGGAgGCGCGGG-CG-----------ACC-ACCGCA- -5'
13974 5' -62 NC_003521.1 + 18311 0.66 0.771094
Target:  5'- uGGacCCUUCGUGCCCaGCgGcGUGGUGc -3'
miRNA:   3'- -CCaaGGAGGCGCGGG-CGaC-CACCGCa -5'
13974 5' -62 NC_003521.1 + 213056 0.66 0.762316
Target:  5'- aGGUuucuUCCUCCGCGCUCGgC-GGacGGCa- -3'
miRNA:   3'- -CCA----AGGAGGCGCGGGC-GaCCa-CCGca -5'
13974 5' -62 NC_003521.1 + 191069 0.66 0.762316
Target:  5'- uGUUCCcgCgGCGaCCG-UGGUGGCGg -3'
miRNA:   3'- cCAAGGa-GgCGCgGGCgACCACCGCa -5'
13974 5' -62 NC_003521.1 + 76003 0.66 0.762316
Target:  5'- cGGUUCCUCCuCcCCCGCg---GGCGc -3'
miRNA:   3'- -CCAAGGAGGcGcGGGCGaccaCCGCa -5'
13974 5' -62 NC_003521.1 + 18049 0.66 0.753439
Target:  5'- aGUUCCUCUGCGCCgaccccaccgaCGCc-GUGGcCGUa -3'
miRNA:   3'- cCAAGGAGGCGCGG-----------GCGacCACC-GCA- -5'
13974 5' -62 NC_003521.1 + 182279 0.66 0.753439
Target:  5'- aGGUa-CUgCGUGCCCGCggGGaUGGUGUu -3'
miRNA:   3'- -CCAagGAgGCGCGGGCGa-CC-ACCGCA- -5'
13974 5' -62 NC_003521.1 + 239356 0.66 0.753439
Target:  5'- cGUUCCccauagUCCGUccccuuGUCCGCUGGUugcuaGGCGg -3'
miRNA:   3'- cCAAGG------AGGCG------CGGGCGACCA-----CCGCa -5'
13974 5' -62 NC_003521.1 + 115234 0.66 0.753439
Target:  5'- aGUUCCUCCGUGUugugcgCCGCcgUGGUcGGgGg -3'
miRNA:   3'- cCAAGGAGGCGCG------GGCG--ACCA-CCgCa -5'
13974 5' -62 NC_003521.1 + 76377 0.66 0.744469
Target:  5'- ---aCCgugacggCCGCGgCCGC-GGUGGCGc -3'
miRNA:   3'- ccaaGGa------GGCGCgGGCGaCCACCGCa -5'
13974 5' -62 NC_003521.1 + 143045 0.66 0.744469
Target:  5'- ---cCUUCCGCGaCCUGgaUGGUGGUGg -3'
miRNA:   3'- ccaaGGAGGCGC-GGGCg-ACCACCGCa -5'
13974 5' -62 NC_003521.1 + 151301 0.67 0.735414
Target:  5'- gGGUUCCgaCGCGCgCaaggcggccagGCgGGUGGCGUc -3'
miRNA:   3'- -CCAAGGagGCGCGgG-----------CGaCCACCGCA- -5'
13974 5' -62 NC_003521.1 + 222979 0.67 0.735414
Target:  5'- aGGgcaCCUCCuGCGCCCaCUuGGUauGGCGg -3'
miRNA:   3'- -CCaa-GGAGG-CGCGGGcGA-CCA--CCGCa -5'
13974 5' -62 NC_003521.1 + 125193 0.67 0.735414
Target:  5'- uGGUggaCUCCaUGgCCGCcaUGGUGGCGg -3'
miRNA:   3'- -CCAag-GAGGcGCgGGCG--ACCACCGCa -5'
13974 5' -62 NC_003521.1 + 122658 0.67 0.735414
Target:  5'- cGGgcgUCgUCUGCGgCgGUggGGUGGCGUc -3'
miRNA:   3'- -CCa--AGgAGGCGCgGgCGa-CCACCGCA- -5'
13974 5' -62 NC_003521.1 + 232191 0.67 0.726281
Target:  5'- --gUCCUCCcacgccauggGCcCCCGCgGGUGGUGg -3'
miRNA:   3'- ccaAGGAGG----------CGcGGGCGaCCACCGCa -5'
13974 5' -62 NC_003521.1 + 143980 0.67 0.723528
Target:  5'- ---cCUUCCGC-CCCaugccgcugcagaaGCUGGUGGUGUg -3'
miRNA:   3'- ccaaGGAGGCGcGGG--------------CGACCACCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.