miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 3' -50.3 NC_003521.1 + 206570 1.03 0.03872
Target:  5'- aGGGCAAGACCUUCUUC-ACCACGUCAa -3'
miRNA:   3'- -CCCGUUCUGGAAGAAGuUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 45037 0.76 0.824515
Target:  5'- aGGGCGAGACCUUCUUCcucuccaagAACCuguACGg-- -3'
miRNA:   3'- -CCCGUUCUGGAAGAAG---------UUGG---UGCagu -5'
13977 3' -50.3 NC_003521.1 + 235427 0.73 0.918379
Target:  5'- cGGGCGAGGCCccCgagCAACC-CGUCu -3'
miRNA:   3'- -CCCGUUCUGGaaGaa-GUUGGuGCAGu -5'
13977 3' -50.3 NC_003521.1 + 62530 0.73 0.929363
Target:  5'- -cGCAGGACCUcaucuucgUCUUCGACCcgcaccgcACGUCGc -3'
miRNA:   3'- ccCGUUCUGGA--------AGAAGUUGG--------UGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 140304 0.73 0.934492
Target:  5'- cGGGCAGGcCCgucgacgucgCUUCAggcgucccACCGCGUCGa -3'
miRNA:   3'- -CCCGUUCuGGaa--------GAAGU--------UGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 64247 0.73 0.939378
Target:  5'- aGGUAcaGGACCUgaUCUUCAgucuggagaACCugGUCAa -3'
miRNA:   3'- cCCGU--UCUGGA--AGAAGU---------UGGugCAGU- -5'
13977 3' -50.3 NC_003521.1 + 135875 0.72 0.944023
Target:  5'- cGGCAcGACCUUCgagUAACCgacgGCGUCGc -3'
miRNA:   3'- cCCGUuCUGGAAGaa-GUUGG----UGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 42089 0.72 0.948429
Target:  5'- cGGCAAGACCUcgUCUggCAccaagcccGCgCGCGUCAa -3'
miRNA:   3'- cCCGUUCUGGA--AGAa-GU--------UG-GUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 100337 0.71 0.963728
Target:  5'- cGGGC---GCCUUCcUCAACCGCGgCGa -3'
miRNA:   3'- -CCCGuucUGGAAGaAGUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 58448 0.71 0.970045
Target:  5'- cGGGCGA-ACUUUCcgCGcACCACGUCGa -3'
miRNA:   3'- -CCCGUUcUGGAAGaaGU-UGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 154132 0.71 0.971207
Target:  5'- cGGGCAAGGgcggcagcgccagcgUCUUCUUucggcgCGAUCACGUCGu -3'
miRNA:   3'- -CCCGUUCU---------------GGAAGAA------GUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 15677 0.71 0.972889
Target:  5'- uGGuGCGcGACUgggUCcgCAACCACGUCGa -3'
miRNA:   3'- -CC-CGUuCUGGa--AGaaGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 65499 0.71 0.972889
Target:  5'- aGGCAGgcGACCUUCaUCGAgCGCuGUCAg -3'
miRNA:   3'- cCCGUU--CUGGAAGaAGUUgGUG-CAGU- -5'
13977 3' -50.3 NC_003521.1 + 70877 0.7 0.980247
Target:  5'- aGGUGAGuACCUacc-CAACCACGUCAg -3'
miRNA:   3'- cCCGUUC-UGGAagaaGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 91508 0.7 0.982333
Target:  5'- aGGcGUGAGACCacgg-CGGCCGCGUCGu -3'
miRNA:   3'- -CC-CGUUCUGGaagaaGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 178570 0.7 0.984249
Target:  5'- -uGCAGGuCCUUCUcCAGCCGCG-CGu -3'
miRNA:   3'- ccCGUUCuGGAAGAaGUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 113607 0.7 0.986003
Target:  5'- gGGGCGGcGCuCUgCUcaugcagcUCAGCCGCGUCAa -3'
miRNA:   3'- -CCCGUUcUG-GAaGA--------AGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 41926 0.7 0.986003
Target:  5'- uGGGCAAcGACUUUCUcacgCGGCUGCGaCAg -3'
miRNA:   3'- -CCCGUU-CUGGAAGAa---GUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 138531 0.69 0.987603
Target:  5'- cGGcGCAccucGACUUcuugccgcgCUUCAACCACGUCGu -3'
miRNA:   3'- -CC-CGUu---CUGGAa--------GAAGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 151057 0.69 0.989058
Target:  5'- -cGCAGGACauacucucgUCUUCGGCCGCGcCGg -3'
miRNA:   3'- ccCGUUCUGga-------AGAAGUUGGUGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.