miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 3' -50.3 NC_003521.1 + 6727 0.66 0.998752
Target:  5'- uGGuGCAGGGCCUgacgCAGCCAgCGcUCGc -3'
miRNA:   3'- -CC-CGUUCUGGAagaaGUUGGU-GC-AGU- -5'
13977 3' -50.3 NC_003521.1 + 15677 0.71 0.972889
Target:  5'- uGGuGCGcGACUgggUCcgCAACCACGUCGa -3'
miRNA:   3'- -CC-CGUuCUGGa--AGaaGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 18445 0.66 0.998752
Target:  5'- -cGCGcGGCCUgugccgCUUCGACCGCGg-- -3'
miRNA:   3'- ccCGUuCUGGAa-----GAAGUUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 19461 0.66 0.999306
Target:  5'- cGGCGGGACCaugUCgcugcgCGGCCAgGUgCAg -3'
miRNA:   3'- cCCGUUCUGGa--AGaa----GUUGGUgCA-GU- -5'
13977 3' -50.3 NC_003521.1 + 19751 0.66 0.999436
Target:  5'- cGGCGucGGGCUUccaCUUCAGCCACcgcucgGUCAu -3'
miRNA:   3'- cCCGU--UCUGGAa--GAAGUUGGUG------CAGU- -5'
13977 3' -50.3 NC_003521.1 + 35767 0.67 0.998498
Target:  5'- cGGGCAAccuGACCaccuuugUCUUCGACC-CGa-- -3'
miRNA:   3'- -CCCGUU---CUGGa------AGAAGUUGGuGCagu -5'
13977 3' -50.3 NC_003521.1 + 37437 0.66 0.999544
Target:  5'- uGGcCGGGACCUgaggCGACCGCGgCGg -3'
miRNA:   3'- cCC-GUUCUGGAagaaGUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 38094 0.69 0.991567
Target:  5'- uGGCAAGACCcgUUUCGACgCG-GUCAu -3'
miRNA:   3'- cCCGUUCUGGaaGAAGUUG-GUgCAGU- -5'
13977 3' -50.3 NC_003521.1 + 40370 0.68 0.99589
Target:  5'- -cGCAGGGCCUUC-UCcACgAUGUCGg -3'
miRNA:   3'- ccCGUUCUGGAAGaAGuUGgUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 41926 0.7 0.986003
Target:  5'- uGGGCAAcGACUUUCUcacgCGGCUGCGaCAg -3'
miRNA:   3'- -CCCGUU-CUGGAAGAa---GUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 42089 0.72 0.948429
Target:  5'- cGGCAAGACCUcgUCUggCAccaagcccGCgCGCGUCAa -3'
miRNA:   3'- cCCGUUCUGGA--AGAa-GU--------UG-GUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 43995 0.69 0.991567
Target:  5'- gGGGUucguGGGCCUgc-UCAACCACGg-- -3'
miRNA:   3'- -CCCGu---UCUGGAagaAGUUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 45037 0.76 0.824515
Target:  5'- aGGGCGAGACCUUCUUCcucuccaagAACCuguACGg-- -3'
miRNA:   3'- -CCCGUUCUGGAAGAAG---------UUGG---UGCagu -5'
13977 3' -50.3 NC_003521.1 + 45740 0.69 0.989058
Target:  5'- cGGGUcAGGCCgggUUUUguagcgcgaGACCGCGUCAg -3'
miRNA:   3'- -CCCGuUCUGGaa-GAAG---------UUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 46443 0.66 0.999151
Target:  5'- cGGCGGGGCUgcgggggCUggUCGGCCuCGUCGu -3'
miRNA:   3'- cCCGUUCUGGaa-----GA--AGUUGGuGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 58448 0.71 0.970045
Target:  5'- cGGGCGA-ACUUUCcgCGcACCACGUCGa -3'
miRNA:   3'- -CCCGUUcUGGAAGaaGU-UGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 62530 0.73 0.929363
Target:  5'- -cGCAGGACCUcaucuucgUCUUCGACCcgcaccgcACGUCGc -3'
miRNA:   3'- ccCGUUCUGGA--------AGAAGUUGG--------UGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 64247 0.73 0.939378
Target:  5'- aGGUAcaGGACCUgaUCUUCAgucuggagaACCugGUCAa -3'
miRNA:   3'- cCCGU--UCUGGA--AGAAGU---------UGGugCAGU- -5'
13977 3' -50.3 NC_003521.1 + 65499 0.71 0.972889
Target:  5'- aGGCAGgcGACCUUCaUCGAgCGCuGUCAg -3'
miRNA:   3'- cCCGUU--CUGGAAGaAGUUgGUG-CAGU- -5'
13977 3' -50.3 NC_003521.1 + 68504 0.69 0.989058
Target:  5'- cGGcCGAGGCCUgCgcCAGCgGCGUCAa -3'
miRNA:   3'- cCC-GUUCUGGAaGaaGUUGgUGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.