miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 3' -50.3 NC_003521.1 + 116289 0.67 0.997007
Target:  5'- uGGGgGGGACCUuucguccccuUCUUCcuCCGuCGUCu -3'
miRNA:   3'- -CCCgUUCUGGA----------AGAAGuuGGU-GCAGu -5'
13977 3' -50.3 NC_003521.1 + 38094 0.69 0.991567
Target:  5'- uGGCAAGACCcgUUUCGACgCG-GUCAu -3'
miRNA:   3'- cCCGUUCUGGaaGAAGUUG-GUgCAGU- -5'
13977 3' -50.3 NC_003521.1 + 43995 0.69 0.991567
Target:  5'- gGGGUucguGGGCCUgc-UCAACCACGg-- -3'
miRNA:   3'- -CCCGu---UCUGGAagaAGUUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 128527 0.69 0.992638
Target:  5'- uGGGCAGGugCggCU--GGCCcgACGUCAg -3'
miRNA:   3'- -CCCGUUCugGaaGAagUUGG--UGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 121299 0.68 0.994455
Target:  5'- gGGGCAgaugAGGCCgaagUgUUCGugggaggugaagGCCACGUCc -3'
miRNA:   3'- -CCCGU----UCUGGa---AgAAGU------------UGGUGCAGu -5'
13977 3' -50.3 NC_003521.1 + 74197 0.68 0.994455
Target:  5'- cGGcGCGcGGCCcgacgccgUCUUCuGCCACGUCc -3'
miRNA:   3'- -CC-CGUuCUGGa-------AGAAGuUGGUGCAGu -5'
13977 3' -50.3 NC_003521.1 + 113740 0.68 0.995496
Target:  5'- cGGGCuGGGCCgccUCUcgUCGguggcccugcccggcACCGCGUCu -3'
miRNA:   3'- -CCCGuUCUGGa--AGA--AGU---------------UGGUGCAGu -5'
13977 3' -50.3 NC_003521.1 + 138860 0.68 0.995631
Target:  5'- uGGGCugcACCUUCUgcguggaucacggCGGCCACGUgGa -3'
miRNA:   3'- -CCCGuucUGGAAGAa------------GUUGGUGCAgU- -5'
13977 3' -50.3 NC_003521.1 + 40370 0.68 0.99589
Target:  5'- -cGCAGGGCCUUC-UCcACgAUGUCGg -3'
miRNA:   3'- ccCGUUCUGGAAGaAGuUGgUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 151057 0.69 0.989058
Target:  5'- -cGCAGGACauacucucgUCUUCGGCCGCGcCGg -3'
miRNA:   3'- ccCGUUCUGga-------AGAAGUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 138531 0.69 0.987603
Target:  5'- cGGcGCAccucGACUUcuugccgcgCUUCAACCACGUCGu -3'
miRNA:   3'- -CC-CGUu---CUGGAa--------GAAGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 113607 0.7 0.986003
Target:  5'- gGGGCGGcGCuCUgCUcaugcagcUCAGCCGCGUCAa -3'
miRNA:   3'- -CCCGUUcUG-GAaGA--------AGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 235427 0.73 0.918379
Target:  5'- cGGGCGAGGCCccCgagCAACC-CGUCu -3'
miRNA:   3'- -CCCGUUCUGGaaGaa-GUUGGuGCAGu -5'
13977 3' -50.3 NC_003521.1 + 62530 0.73 0.929363
Target:  5'- -cGCAGGACCUcaucuucgUCUUCGACCcgcaccgcACGUCGc -3'
miRNA:   3'- ccCGUUCUGGA--------AGAAGUUGG--------UGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 140304 0.73 0.934492
Target:  5'- cGGGCAGGcCCgucgacgucgCUUCAggcgucccACCGCGUCGa -3'
miRNA:   3'- -CCCGUUCuGGaa--------GAAGU--------UGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 64247 0.73 0.939378
Target:  5'- aGGUAcaGGACCUgaUCUUCAgucuggagaACCugGUCAa -3'
miRNA:   3'- cCCGU--UCUGGA--AGAAGU---------UGGugCAGU- -5'
13977 3' -50.3 NC_003521.1 + 42089 0.72 0.948429
Target:  5'- cGGCAAGACCUcgUCUggCAccaagcccGCgCGCGUCAa -3'
miRNA:   3'- cCCGUUCUGGA--AGAa-GU--------UG-GUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 58448 0.71 0.970045
Target:  5'- cGGGCGA-ACUUUCcgCGcACCACGUCGa -3'
miRNA:   3'- -CCCGUUcUGGAAGaaGU-UGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 65499 0.71 0.972889
Target:  5'- aGGCAGgcGACCUUCaUCGAgCGCuGUCAg -3'
miRNA:   3'- cCCGUU--CUGGAAGaAGUUgGUG-CAGU- -5'
13977 3' -50.3 NC_003521.1 + 41926 0.7 0.986003
Target:  5'- uGGGCAAcGACUUUCUcacgCGGCUGCGaCAg -3'
miRNA:   3'- -CCCGUU-CUGGAAGAa---GUUGGUGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.