miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 3' -53 NC_003521.1 + 205137 1.09 0.007696
Target:  5'- uCUCAGAGAGCCAACAGCAGGAGUUCGa -3'
miRNA:   3'- -GAGUCUCUCGGUUGUCGUCCUCAAGC- -5'
13979 3' -53 NC_003521.1 + 181880 0.75 0.709661
Target:  5'- -cCAGAGGGCCu---GguGGAGUUCGa -3'
miRNA:   3'- gaGUCUCUCGGuuguCguCCUCAAGC- -5'
13979 3' -53 NC_003521.1 + 107794 0.74 0.77725
Target:  5'- uCUCuGGGAGCCGACGGUgauuaGGGuGUUCc -3'
miRNA:   3'- -GAGuCUCUCGGUUGUCG-----UCCuCAAGc -5'
13979 3' -53 NC_003521.1 + 11966 0.72 0.838539
Target:  5'- gUCAGAGAGCCGAaacuCGGgGGGAGg--- -3'
miRNA:   3'- gAGUCUCUCGGUU----GUCgUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 66261 0.72 0.846611
Target:  5'- aCUUcGuGAGCCAacaGCAGCAGGAGggaggCGg -3'
miRNA:   3'- -GAGuCuCUCGGU---UGUCGUCCUCaa---GC- -5'
13979 3' -53 NC_003521.1 + 6432 0.72 0.869639
Target:  5'- uUCGGGGGGCCGcugcgacaACAGCacGGGAGgagCGg -3'
miRNA:   3'- gAGUCUCUCGGU--------UGUCG--UCCUCaa-GC- -5'
13979 3' -53 NC_003521.1 + 155599 0.71 0.883942
Target:  5'- ---cGAGAG-CAGCAGCAGGAGguggCGa -3'
miRNA:   3'- gaguCUCUCgGUUGUCGUCCUCaa--GC- -5'
13979 3' -53 NC_003521.1 + 160116 0.71 0.897358
Target:  5'- uUCAGGGcGCUGgagcucuacucGCAGCAGGAGUUgCGu -3'
miRNA:   3'- gAGUCUCuCGGU-----------UGUCGUCCUCAA-GC- -5'
13979 3' -53 NC_003521.1 + 37532 0.7 0.926844
Target:  5'- gUCcuGGGGGUgGGCAGCGGGGGUcgCGg -3'
miRNA:   3'- gAGu-CUCUCGgUUGUCGUCCUCAa-GC- -5'
13979 3' -53 NC_003521.1 + 198342 0.69 0.941695
Target:  5'- cCUguGAcGGGCCGugAGuCAGG-GUUCGg -3'
miRNA:   3'- -GAguCU-CUCGGUugUC-GUCCuCAAGC- -5'
13979 3' -53 NC_003521.1 + 89673 0.69 0.941695
Target:  5'- --aGGAGAGagGACAGCAGGAGg--- -3'
miRNA:   3'- gagUCUCUCggUUGUCGUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 174128 0.69 0.95042
Target:  5'- cCUCAGGGGGUC-GCAGCccAGGAGg--- -3'
miRNA:   3'- -GAGUCUCUCGGuUGUCG--UCCUCaagc -5'
13979 3' -53 NC_003521.1 + 219578 0.69 0.95042
Target:  5'- gCUguGuGGGGCuCGcCAGCAGGGGUUCu -3'
miRNA:   3'- -GAguC-UCUCG-GUuGUCGUCCUCAAGc -5'
13979 3' -53 NC_003521.1 + 145891 0.69 0.954437
Target:  5'- ---cGAGGccGCCGGCGGCGGGAGcagCGg -3'
miRNA:   3'- gaguCUCU--CGGUUGUCGUCCUCaa-GC- -5'
13979 3' -53 NC_003521.1 + 127079 0.69 0.958228
Target:  5'- gUCGGucAGCCGcCAGCAGGAacgUCGg -3'
miRNA:   3'- gAGUCucUCGGUuGUCGUCCUca-AGC- -5'
13979 3' -53 NC_003521.1 + 168045 0.68 0.961797
Target:  5'- uCUUGGAGcugugccGCCGACGGCGGGuGcUCGa -3'
miRNA:   3'- -GAGUCUCu------CGGUUGUCGUCCuCaAGC- -5'
13979 3' -53 NC_003521.1 + 121678 0.68 0.961797
Target:  5'- cCUCGGAGGGCCGugAugcGCGGugagguauccGAGUUCc -3'
miRNA:   3'- -GAGUCUCUCGGUugU---CGUC----------CUCAAGc -5'
13979 3' -53 NC_003521.1 + 208230 0.68 0.965149
Target:  5'- -aCAGAcaccaGAGCC-ACAGCAGGAGc--- -3'
miRNA:   3'- gaGUCU-----CUCGGuUGUCGUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 172860 0.68 0.968288
Target:  5'- uCUCGGAGucugaGGCCgAGCuGCAGGAGg--- -3'
miRNA:   3'- -GAGUCUC-----UCGG-UUGuCGUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 64338 0.68 0.971221
Target:  5'- -gCAGAuGAGCCAGCuGCAGGcccuGggCGc -3'
miRNA:   3'- gaGUCU-CUCGGUUGuCGUCCu---CaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.