Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13979 | 3' | -53 | NC_003521.1 | + | 223081 | 0.66 | 0.991213 |
Target: 5'- aCUCGGAG-GCCAGCGaacgugcguagaucuGCGGGAuggCGg -3' miRNA: 3'- -GAGUCUCuCGGUUGU---------------CGUCCUcaaGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 214155 | 0.67 | 0.984862 |
Target: 5'- -gCAGGGAGCCGcggAUGGCuuggucgacGGGcAGUUCGg -3' miRNA: 3'- gaGUCUCUCGGU---UGUCG---------UCC-UCAAGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 125292 | 0.66 | 0.986056 |
Target: 5'- gUCAGGcGAGCCGcgucguucgcggacGCGGCGGuGGGUcCGg -3' miRNA: 3'- gAGUCU-CUCGGU--------------UGUCGUC-CUCAaGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 103139 | 0.66 | 0.986545 |
Target: 5'- --gGGAGAGCCcaggGGCAGCAGGcGcgUCu -3' miRNA: 3'- gagUCUCUCGG----UUGUCGUCCuCa-AGc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 43663 | 0.66 | 0.988655 |
Target: 5'- -gCAGAGAGgaggagaggaggagCAGCAGCAGGAGgagaCGa -3' miRNA: 3'- gaGUCUCUCg-------------GUUGUCGUCCUCaa--GC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 80089 | 0.66 | 0.989072 |
Target: 5'- aUCGGGGGuGCCGACGGCgcgaccacgauguuGGGAGcgCc -3' miRNA: 3'- gAGUCUCU-CGGUUGUCG--------------UCCUCaaGc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 141979 | 0.66 | 0.989477 |
Target: 5'- gUCAG-GAGCU-GCAGCGGGAGc--- -3' miRNA: 3'- gAGUCuCUCGGuUGUCGUCCUCaagc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 104685 | 0.66 | 0.990742 |
Target: 5'- gCUCgAGGGGGCCGugGGCGGcg--UCGa -3' miRNA: 3'- -GAG-UCUCUCGGUugUCGUCcucaAGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 136927 | 0.66 | 0.990742 |
Target: 5'- -cCAGGGGcGCCAGCGuGacuGGGAGUUCc -3' miRNA: 3'- gaGUCUCU-CGGUUGU-Cg--UCCUCAAGc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 187887 | 0.67 | 0.984862 |
Target: 5'- cCUCGGGcGGCacgGGCGGCGGGGGcaggUCGa -3' miRNA: 3'- -GAGUCUcUCGg--UUGUCGUCCUCa---AGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 5495 | 0.68 | 0.971221 |
Target: 5'- cCUUAGAucuGGCCGucuCGGCAGGAGUa-- -3' miRNA: 3'- -GAGUCUc--UCGGUu--GUCGUCCUCAagc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 64338 | 0.68 | 0.971221 |
Target: 5'- -gCAGAuGAGCCAGCuGCAGGcccuGggCGc -3' miRNA: 3'- gaGUCU-CUCGGUUGuCGUCCu---CaaGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 11966 | 0.72 | 0.838539 |
Target: 5'- gUCAGAGAGCCGAaacuCGGgGGGAGg--- -3' miRNA: 3'- gAGUCUCUCGGUU----GUCgUCCUCaagc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 66261 | 0.72 | 0.846611 |
Target: 5'- aCUUcGuGAGCCAacaGCAGCAGGAGggaggCGg -3' miRNA: 3'- -GAGuCuCUCGGU---UGUCGUCCUCaa---GC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 155599 | 0.71 | 0.883942 |
Target: 5'- ---cGAGAG-CAGCAGCAGGAGguggCGa -3' miRNA: 3'- gaguCUCUCgGUUGUCGUCCUCaa--GC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 198342 | 0.69 | 0.941695 |
Target: 5'- cCUguGAcGGGCCGugAGuCAGG-GUUCGg -3' miRNA: 3'- -GAguCU-CUCGGUugUC-GUCCuCAAGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 174128 | 0.69 | 0.95042 |
Target: 5'- cCUCAGGGGGUC-GCAGCccAGGAGg--- -3' miRNA: 3'- -GAGUCUCUCGGuUGUCG--UCCUCaagc -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 145891 | 0.69 | 0.954437 |
Target: 5'- ---cGAGGccGCCGGCGGCGGGAGcagCGg -3' miRNA: 3'- gaguCUCU--CGGUUGUCGUCCUCaa-GC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 127079 | 0.69 | 0.958228 |
Target: 5'- gUCGGucAGCCGcCAGCAGGAacgUCGg -3' miRNA: 3'- gAGUCucUCGGUuGUCGUCCUca-AGC- -5' |
|||||||
13979 | 3' | -53 | NC_003521.1 | + | 172860 | 0.68 | 0.968288 |
Target: 5'- uCUCGGAGucugaGGCCgAGCuGCAGGAGg--- -3' miRNA: 3'- -GAGUCUC-----UCGG-UUGuCGUCCUCaagc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home