miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 3' -53 NC_003521.1 + 4197 0.66 0.992912
Target:  5'- uCUCuGGGAGCUGAaAGC-GGAGggCGg -3'
miRNA:   3'- -GAGuCUCUCGGUUgUCGuCCUCaaGC- -5'
13979 3' -53 NC_003521.1 + 5495 0.68 0.971221
Target:  5'- cCUUAGAucuGGCCGucuCGGCAGGAGUa-- -3'
miRNA:   3'- -GAGUCUc--UCGGUu--GUCGUCCUCAagc -5'
13979 3' -53 NC_003521.1 + 6432 0.72 0.869639
Target:  5'- uUCGGGGGGCCGcugcgacaACAGCacGGGAGgagCGg -3'
miRNA:   3'- gAGUCUCUCGGU--------UGUCG--UCCUCaa-GC- -5'
13979 3' -53 NC_003521.1 + 11966 0.72 0.838539
Target:  5'- gUCAGAGAGCCGAaacuCGGgGGGAGg--- -3'
miRNA:   3'- gAGUCUCUCGGUU----GUCgUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 20635 0.67 0.981021
Target:  5'- gCUCGGAGAGCCG-CGcGCuGGuGggCGc -3'
miRNA:   3'- -GAGUCUCUCGGUuGU-CGuCCuCaaGC- -5'
13979 3' -53 NC_003521.1 + 21955 0.67 0.976494
Target:  5'- -gCAGuGGGCgAgcGCGGCGGGAcucGUUCGg -3'
miRNA:   3'- gaGUCuCUCGgU--UGUCGUCCU---CAAGC- -5'
13979 3' -53 NC_003521.1 + 37532 0.7 0.926844
Target:  5'- gUCcuGGGGGUgGGCAGCGGGGGUcgCGg -3'
miRNA:   3'- gAGu-CUCUCGgUUGUCGUCCUCAa-GC- -5'
13979 3' -53 NC_003521.1 + 43663 0.66 0.988655
Target:  5'- -gCAGAGAGgaggagaggaggagCAGCAGCAGGAGgagaCGa -3'
miRNA:   3'- gaGUCUCUCg-------------GUUGUCGUCCUCaa--GC- -5'
13979 3' -53 NC_003521.1 + 52663 0.68 0.973955
Target:  5'- uUCAGAGAGCggCAGCAGCGgcaccGGcAGcgUCGg -3'
miRNA:   3'- gAGUCUCUCG--GUUGUCGU-----CC-UCa-AGC- -5'
13979 3' -53 NC_003521.1 + 64338 0.68 0.971221
Target:  5'- -gCAGAuGAGCCAGCuGCAGGcccuGggCGc -3'
miRNA:   3'- gaGUCU-CUCGGUUGuCGUCCu---CaaGC- -5'
13979 3' -53 NC_003521.1 + 66261 0.72 0.846611
Target:  5'- aCUUcGuGAGCCAacaGCAGCAGGAGggaggCGg -3'
miRNA:   3'- -GAGuCuCUCGGU---UGUCGUCCUCaa---GC- -5'
13979 3' -53 NC_003521.1 + 80089 0.66 0.989072
Target:  5'- aUCGGGGGuGCCGACGGCgcgaccacgauguuGGGAGcgCc -3'
miRNA:   3'- gAGUCUCU-CGGUUGUCG--------------UCCUCaaGc -5'
13979 3' -53 NC_003521.1 + 89673 0.69 0.941695
Target:  5'- --aGGAGAGagGACAGCAGGAGg--- -3'
miRNA:   3'- gagUCUCUCggUUGUCGUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 103139 0.66 0.986545
Target:  5'- --gGGAGAGCCcaggGGCAGCAGGcGcgUCu -3'
miRNA:   3'- gagUCUCUCGG----UUGUCGUCCuCa-AGc -5'
13979 3' -53 NC_003521.1 + 104685 0.66 0.990742
Target:  5'- gCUCgAGGGGGCCGugGGCGGcg--UCGa -3'
miRNA:   3'- -GAG-UCUCUCGGUugUCGUCcucaAGC- -5'
13979 3' -53 NC_003521.1 + 107794 0.74 0.77725
Target:  5'- uCUCuGGGAGCCGACGGUgauuaGGGuGUUCc -3'
miRNA:   3'- -GAGuCUCUCGGUUGUCG-----UCCuCAAGc -5'
13979 3' -53 NC_003521.1 + 121678 0.68 0.961797
Target:  5'- cCUCGGAGGGCCGugAugcGCGGugagguauccGAGUUCc -3'
miRNA:   3'- -GAGUCUCUCGGUugU---CGUC----------CUCAAGc -5'
13979 3' -53 NC_003521.1 + 125292 0.66 0.986056
Target:  5'- gUCAGGcGAGCCGcgucguucgcggacGCGGCGGuGGGUcCGg -3'
miRNA:   3'- gAGUCU-CUCGGU--------------UGUCGUC-CUCAaGC- -5'
13979 3' -53 NC_003521.1 + 127079 0.69 0.958228
Target:  5'- gUCGGucAGCCGcCAGCAGGAacgUCGg -3'
miRNA:   3'- gAGUCucUCGGUuGUCGUCCUca-AGC- -5'
13979 3' -53 NC_003521.1 + 136927 0.66 0.990742
Target:  5'- -cCAGGGGcGCCAGCGuGacuGGGAGUUCc -3'
miRNA:   3'- gaGUCUCU-CGGUUGU-Cg--UCCUCAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.