miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 88662 0.72 0.326317
Target:  5'- --gGGCCGCcagguCGGUGGGcCGGcGGCCc -3'
miRNA:   3'- uaaCCGGCGc----GCCGCCCuGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 197471 0.72 0.326317
Target:  5'- -cUGGCggauguucaCGCGCGGCGGGcCGGacGGCg -3'
miRNA:   3'- uaACCG---------GCGCGCCGCCCuGCCa-CCGg -5'
13980 3' -64.3 NC_003521.1 + 238462 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 38234 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 111243 0.72 0.329051
Target:  5'- --cGGCCgGCGCGGCGcGGCGGagcagccaucgucgGGCCc -3'
miRNA:   3'- uaaCCGG-CGCGCCGCcCUGCCa-------------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 76354 0.72 0.332493
Target:  5'- --cGGCUGCgGCGGCGGcagcggcgaccguGACGGccgcGGCCg -3'
miRNA:   3'- uaaCCGGCG-CGCCGCC-------------CUGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 122508 0.72 0.333184
Target:  5'- --gGGCCaacGCgGCGGCGGGcaggccggcgGCGGUGGUa -3'
miRNA:   3'- uaaCCGG---CG-CGCCGCCC----------UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 87735 0.72 0.333184
Target:  5'- --cGGCgGCGUGGUGGGcccCGGcccgGGCCc -3'
miRNA:   3'- uaaCCGgCGCGCCGCCCu--GCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 155491 0.72 0.347235
Target:  5'- --cGGCC-UGCGGCGGGcCGcG-GGCCa -3'
miRNA:   3'- uaaCCGGcGCGCCGCCCuGC-CaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 39200 0.71 0.353695
Target:  5'- cUUGGUCagcguccgcagcaGCGCGGgcuCGGGgacaGCGGUGGCCc -3'
miRNA:   3'- uAACCGG-------------CGCGCC---GCCC----UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 239428 0.71 0.353695
Target:  5'- cUUGGUCagcguccgcagcaGCGCGGgcuCGGGgacaGCGGUGGCCc -3'
miRNA:   3'- uAACCGG-------------CGCGCC---GCCC----UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 32349 0.71 0.354418
Target:  5'- cGUUuGCCGgaGcCGGCGGGACGG-GGCUu -3'
miRNA:   3'- -UAAcCGGCg-C-GCCGCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 21960 0.71 0.354418
Target:  5'- --gGGCgaGCGCGGCGGGAcucguuCGGUuucGCCg -3'
miRNA:   3'- uaaCCGg-CGCGCCGCCCU------GCCAc--CGG- -5'
13980 3' -64.3 NC_003521.1 + 218383 0.71 0.361705
Target:  5'- --cGuGCCGCGUGaaGCGcGGGCGGUacucGGCCa -3'
miRNA:   3'- uaaC-CGGCGCGC--CGC-CCUGCCA----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 166859 0.71 0.361705
Target:  5'- --cGGUgGCGCGGCGGG-CGcaGGUCg -3'
miRNA:   3'- uaaCCGgCGCGCCGCCCuGCcaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 43568 0.71 0.361705
Target:  5'- --cGGCCGCugacUGGgGGGACGGgGGCa -3'
miRNA:   3'- uaaCCGGCGc---GCCgCCCUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 123176 0.71 0.361705
Target:  5'- -gUGGCgGCgGCGGCggGGGACcGUaGGCCg -3'
miRNA:   3'- uaACCGgCG-CGCCG--CCCUGcCA-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 111175 0.71 0.369095
Target:  5'- --cGGCCGCccCGGCGacggcgccgcGGACGGUGGgCu -3'
miRNA:   3'- uaaCCGGCGc-GCCGC----------CCUGCCACCgG- -5'
13980 3' -64.3 NC_003521.1 + 45716 0.71 0.376588
Target:  5'- uAUUGGCgGgGCGucuGCGGGACGcGggucaGGCCg -3'
miRNA:   3'- -UAACCGgCgCGC---CGCCCUGC-Ca----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 218619 0.71 0.384184
Target:  5'- --cGGCCgccagcGCGCGGCGGuaaGCGGccacGGCCg -3'
miRNA:   3'- uaaCCGG------CGCGCCGCCc--UGCCa---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.