miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13982 5' -53.9 NC_003521.1 + 204199 1.09 0.006993
Target:  5'- cGUCGUAGACCACCAUGGACGAGCACAg -3'
miRNA:   3'- -CAGCAUCUGGUGGUACCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 100220 0.79 0.478513
Target:  5'- gGUCGUAGGCCGgCGaGGugGAGCugGg -3'
miRNA:   3'- -CAGCAUCUGGUgGUaCCugCUCGugU- -5'
13982 5' -53.9 NC_003521.1 + 139780 0.78 0.506863
Target:  5'- cGUCGgcGGCCGCCAUGGAgcuGCACGg -3'
miRNA:   3'- -CAGCauCUGGUGGUACCUgcuCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 219035 0.77 0.565506
Target:  5'- gGUCGUGGAUCACCGccacGGACaGGCACGc -3'
miRNA:   3'- -CAGCAUCUGGUGGUa---CCUGcUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 228242 0.76 0.595515
Target:  5'- gGUCGUGGuggguGCCGCCGUGGugGucgguuuggccAGCACGg -3'
miRNA:   3'- -CAGCAUC-----UGGUGGUACCugC-----------UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 115244 0.74 0.70603
Target:  5'- uGUUGUGcGCCGCCGUGGuCGGGgGCAg -3'
miRNA:   3'- -CAGCAUcUGGUGGUACCuGCUCgUGU- -5'
13982 5' -53.9 NC_003521.1 + 168117 0.73 0.754493
Target:  5'- -gCGUGGAUCGCCGaGGACGAcaGCGCc -3'
miRNA:   3'- caGCAUCUGGUGGUaCCUGCU--CGUGu -5'
13982 5' -53.9 NC_003521.1 + 223795 0.73 0.773204
Target:  5'- -cCGUGGGCCGCCAgacGACGGGCcuGCGc -3'
miRNA:   3'- caGCAUCUGGUGGUac-CUGCUCG--UGU- -5'
13982 5' -53.9 NC_003521.1 + 195239 0.72 0.817688
Target:  5'- gGUUGUAGGCCACCGaguaGGGCGAGaagggcucCACGc -3'
miRNA:   3'- -CAGCAUCUGGUGGUa---CCUGCUC--------GUGU- -5'
13982 5' -53.9 NC_003521.1 + 138893 0.72 0.817688
Target:  5'- -aCGUGGACC-CCAccGGCGAGUACGc -3'
miRNA:   3'- caGCAUCUGGuGGUacCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 137228 0.72 0.826124
Target:  5'- -cCGU-GcCCACCGUGGAgGAGUACGu -3'
miRNA:   3'- caGCAuCuGGUGGUACCUgCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 112373 0.72 0.834388
Target:  5'- -aCGU-GAuCCGCC-UGGGCGAGCGCu -3'
miRNA:   3'- caGCAuCU-GGUGGuACCUGCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 204473 0.72 0.834388
Target:  5'- cUCGUAGGCCGUCAggugauaGGACGAGCGg- -3'
miRNA:   3'- cAGCAUCUGGUGGUa------CCUGCUCGUgu -5'
13982 5' -53.9 NC_003521.1 + 21922 0.71 0.849591
Target:  5'- aGUCG-AGACCcuggcgggcgGCCucgggcuggagcaGUGGGCGAGCGCGg -3'
miRNA:   3'- -CAGCaUCUGG----------UGG-------------UACCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 88887 0.71 0.850373
Target:  5'- aUCGUGGuCCACCGUGaGgcccACGAGCAgAg -3'
miRNA:   3'- cAGCAUCuGGUGGUAC-C----UGCUCGUgU- -5'
13982 5' -53.9 NC_003521.1 + 77583 0.71 0.851152
Target:  5'- cGUUGaAGACCGCCGUGGccgaacccacgucacCGGGCGCGc -3'
miRNA:   3'- -CAGCaUCUGGUGGUACCu--------------GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 158291 0.71 0.879983
Target:  5'- gGUCGUAcGACCACCc-GGACGAcucagcaggagaGCACu -3'
miRNA:   3'- -CAGCAU-CUGGUGGuaCCUGCU------------CGUGu -5'
13982 5' -53.9 NC_003521.1 + 199363 0.7 0.886861
Target:  5'- cGUCGUGGGCCACCAccGugGuGUAg- -3'
miRNA:   3'- -CAGCAUCUGGUGGUacCugCuCGUgu -5'
13982 5' -53.9 NC_003521.1 + 103294 0.7 0.89352
Target:  5'- cGUCGUAGGCCACCAcGcGCcGGUACu -3'
miRNA:   3'- -CAGCAUCUGGUGGUaCcUGcUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 47140 0.7 0.899956
Target:  5'- aUCGUAGcaauagacGCCGCCGcgcuUGccGACGAGCACGa -3'
miRNA:   3'- cAGCAUC--------UGGUGGU----AC--CUGCUCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.