miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13982 5' -53.9 NC_003521.1 + 238204 0.68 0.962732
Target:  5'- aGUCG-AGGCCaagaGCC-UGGGCGucGGCACGg -3'
miRNA:   3'- -CAGCaUCUGG----UGGuACCUGC--UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 184936 0.7 0.914475
Target:  5'- gGUCGgcGACCGCgCAUGGuagcggucccaucuUGGGCGCGa -3'
miRNA:   3'- -CAGCauCUGGUG-GUACCu-------------GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 34199 0.69 0.933756
Target:  5'- aUCGUGGcCCACCA-GGGCGgcguagacGGCGCc -3'
miRNA:   3'- cAGCAUCuGGUGGUaCCUGC--------UCGUGu -5'
13982 5' -53.9 NC_003521.1 + 149402 0.69 0.943167
Target:  5'- uUCGUGG-CCgugGCCGUcacGGACGAGCAg- -3'
miRNA:   3'- cAGCAUCuGG---UGGUA---CCUGCUCGUgu -5'
13982 5' -53.9 NC_003521.1 + 234041 0.68 0.954806
Target:  5'- cGUCugGUGGACCggcaugguacuccugGCCAUGGacgcccugggacucgGCGAGCGCu -3'
miRNA:   3'- -CAG--CAUCUGG---------------UGGUACC---------------UGCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 167901 0.68 0.95557
Target:  5'- cGUUGUAGAgCGgCA-GGugGGGCGCc -3'
miRNA:   3'- -CAGCAUCUgGUgGUaCCugCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 213784 0.68 0.9589
Target:  5'- -gCGUAGACgCGCaUGUGGACGccgaaacGGCGCAg -3'
miRNA:   3'- caGCAUCUG-GUG-GUACCUGC-------UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 18879 0.68 0.959259
Target:  5'- -aCGgcGACCGCC-UGGACGugucGUGCAu -3'
miRNA:   3'- caGCauCUGGUGGuACCUGCu---CGUGU- -5'
13982 5' -53.9 NC_003521.1 + 22944 0.68 0.962732
Target:  5'- --aGUAGACCGCUagAUGGcuCGGGUGCAc -3'
miRNA:   3'- cagCAUCUGGUGG--UACCu-GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 37470 0.7 0.912147
Target:  5'- -gCGcGGGCCACCGUGGugccgcaGGGCACc -3'
miRNA:   3'- caGCaUCUGGUGGUACCug-----CUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 114508 0.7 0.910969
Target:  5'- cGUCGUGG-CCGCCGUGcccaccgccgccACGGGCACc -3'
miRNA:   3'- -CAGCAUCuGGUGGUACc-----------UGCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 56024 0.7 0.906166
Target:  5'- aGUCGgaggcGGCCACCA-GGGCGuccaGGCGCGc -3'
miRNA:   3'- -CAGCau---CUGGUGGUaCCUGC----UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 219035 0.77 0.565506
Target:  5'- gGUCGUGGAUCACCGccacGGACaGGCACGc -3'
miRNA:   3'- -CAGCAUCUGGUGGUa---CCUGcUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 115244 0.74 0.70603
Target:  5'- uGUUGUGcGCCGCCGUGGuCGGGgGCAg -3'
miRNA:   3'- -CAGCAUcUGGUGGUACCuGCUCgUGU- -5'
13982 5' -53.9 NC_003521.1 + 223795 0.73 0.773204
Target:  5'- -cCGUGGGCCGCCAgacGACGGGCcuGCGc -3'
miRNA:   3'- caGCAUCUGGUGGUac-CUGCUCG--UGU- -5'
13982 5' -53.9 NC_003521.1 + 138893 0.72 0.817688
Target:  5'- -aCGUGGACC-CCAccGGCGAGUACGc -3'
miRNA:   3'- caGCAUCUGGuGGUacCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 88887 0.71 0.850373
Target:  5'- aUCGUGGuCCACCGUGaGgcccACGAGCAgAg -3'
miRNA:   3'- cAGCAUCuGGUGGUAC-C----UGCUCGUgU- -5'
13982 5' -53.9 NC_003521.1 + 77583 0.71 0.851152
Target:  5'- cGUUGaAGACCGCCGUGGccgaacccacgucacCGGGCGCGc -3'
miRNA:   3'- -CAGCaUCUGGUGGUACCu--------------GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 103294 0.7 0.89352
Target:  5'- cGUCGUAGGCCACCAcGcGCcGGUACu -3'
miRNA:   3'- -CAGCAUCUGGUGGUaCcUGcUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 47140 0.7 0.899956
Target:  5'- aUCGUAGcaauagacGCCGCCGcgcuUGccGACGAGCACGa -3'
miRNA:   3'- cAGCAUC--------UGGUGGU----AC--CUGCUCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.