miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13982 5' -53.9 NC_003521.1 + 14371 0.67 0.974561
Target:  5'- --gGUGGcCCACaaccUGGACGAGCugGc -3'
miRNA:   3'- cagCAUCuGGUGgu--ACCUGCUCGugU- -5'
13982 5' -53.9 NC_003521.1 + 15217 0.69 0.928703
Target:  5'- aUCGUGGGgCugCAggcGGcCGAGCGCGa -3'
miRNA:   3'- cAGCAUCUgGugGUa--CCuGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 16103 0.68 0.951661
Target:  5'- cGUCGgcGAgCACCAcGGGCGGG-ACGu -3'
miRNA:   3'- -CAGCauCUgGUGGUaCCUGCUCgUGU- -5'
13982 5' -53.9 NC_003521.1 + 18879 0.68 0.959259
Target:  5'- -aCGgcGACCGCC-UGGACGugucGUGCAu -3'
miRNA:   3'- caGCauCUGGUGGuACCUGCu---CGUGU- -5'
13982 5' -53.9 NC_003521.1 + 21922 0.71 0.849591
Target:  5'- aGUCG-AGACCcuggcgggcgGCCucgggcuggagcaGUGGGCGAGCGCGg -3'
miRNA:   3'- -CAGCaUCUGG----------UGG-------------UACCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 22944 0.68 0.962732
Target:  5'- --aGUAGACCGCUagAUGGcuCGGGUGCAc -3'
miRNA:   3'- cagCAUCUGGUGG--UACCu-GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 29567 0.66 0.988315
Target:  5'- -----cGACaCACCccGGugGAGCACGu -3'
miRNA:   3'- cagcauCUG-GUGGuaCCugCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 34199 0.69 0.933756
Target:  5'- aUCGUGGcCCACCA-GGGCGgcguagacGGCGCc -3'
miRNA:   3'- cAGCAUCuGGUGGUaCCUGC--------UCGUGu -5'
13982 5' -53.9 NC_003521.1 + 36627 0.68 0.962732
Target:  5'- cUUGUGGugcGCCugCAUGGACuggaaGGCGCAc -3'
miRNA:   3'- cAGCAUC---UGGugGUACCUGc----UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 36868 0.66 0.979323
Target:  5'- -aCGUGGGCCGgCAagcgGGugaccacguACGGGCACAa -3'
miRNA:   3'- caGCAUCUGGUgGUa---CC---------UGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 37470 0.7 0.912147
Target:  5'- -gCGcGGGCCACCGUGGugccgcaGGGCACc -3'
miRNA:   3'- caGCaUCUGGUGGUACCug-----CUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 40825 0.66 0.983389
Target:  5'- cUCGgggcgGGGCCcgcGCCAUGGACaccuugcuGCACAa -3'
miRNA:   3'- cAGCa----UCUGG---UGGUACCUGcu------CGUGU- -5'
13982 5' -53.9 NC_003521.1 + 47140 0.7 0.899956
Target:  5'- aUCGUAGcaauagacGCCGCCGcgcuUGccGACGAGCACGa -3'
miRNA:   3'- cAGCAUC--------UGGUGGU----AC--CUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 53087 0.66 0.986819
Target:  5'- -gCGcAGGCCAuucgagacgaauCCGUGGAagccCGAGCGCGa -3'
miRNA:   3'- caGCaUCUGGU------------GGUACCU----GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 54344 0.66 0.985179
Target:  5'- cUCGcccUGGGCCACUcgGGGCGuGGCGa- -3'
miRNA:   3'- cAGC---AUCUGGUGGuaCCUGC-UCGUgu -5'
13982 5' -53.9 NC_003521.1 + 56024 0.7 0.906166
Target:  5'- aGUCGgaggcGGCCACCA-GGGCGuccaGGCGCGc -3'
miRNA:   3'- -CAGCau---CUGGUGGUaCCUGC----UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 69425 0.66 0.988315
Target:  5'- -aCGgcGcgcACCACCAcGGugGAGuCGCAg -3'
miRNA:   3'- caGCauC---UGGUGGUaCCugCUC-GUGU- -5'
13982 5' -53.9 NC_003521.1 + 76177 0.66 0.983389
Target:  5'- cGUCGcGGGCCugCGUGaGGCGc-CACAg -3'
miRNA:   3'- -CAGCaUCUGGugGUAC-CUGCucGUGU- -5'
13982 5' -53.9 NC_003521.1 + 77583 0.71 0.851152
Target:  5'- cGUUGaAGACCGCCGUGGccgaacccacgucacCGGGCGCGc -3'
miRNA:   3'- -CAGCaUCUGGUGGUACCu--------------GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 86018 0.66 0.988315
Target:  5'- aGUCGU-GACCGCCca--ACGAGCugAc -3'
miRNA:   3'- -CAGCAuCUGGUGGuaccUGCUCGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.