miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 78148 0.73 0.480061
Target:  5'- gCGGCGGCGGCCGCgaacgaggCACGAUCCUgGUGg -3'
miRNA:   3'- -GUCGCUGCCGGUG--------GUGUUGGGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 223613 0.73 0.506811
Target:  5'- -cGCGACGGCgacgcucuucucuCGCCAUAGCCCCgacGUGc -3'
miRNA:   3'- guCGCUGCCG-------------GUGGUGUUGGGGa--CAU- -5'
13984 3' -58.8 NC_003521.1 + 98471 0.73 0.507745
Target:  5'- gCGGCGGCGGCCGCgGCGGCCgUg--- -3'
miRNA:   3'- -GUCGCUGCCGGUGgUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 159238 0.73 0.508679
Target:  5'- aAGaUGACGGCCACCuuccucuccaagaaGACCCCUGUu -3'
miRNA:   3'- gUC-GCUGCCGGUGGug------------UUGGGGACAu -5'
13984 3' -58.8 NC_003521.1 + 116770 0.72 0.517124
Target:  5'- gCAGCGugGGCCgccGCCGCGGCaCgCUGg- -3'
miRNA:   3'- -GUCGCugCCGG---UGGUGUUG-GgGACau -5'
13984 3' -58.8 NC_003521.1 + 152471 0.72 0.517124
Target:  5'- aGGCGGCGGCCACgAUcuCCCCg--- -3'
miRNA:   3'- gUCGCUGCCGGUGgUGuuGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 225593 0.72 0.517124
Target:  5'- uCGGCGGCcucgcgcucGGCCGCCuGCAGCCCCa--- -3'
miRNA:   3'- -GUCGCUG---------CCGGUGG-UGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 68424 0.72 0.545654
Target:  5'- gCGGCGACGGCUccGCCGgcGCCCCUc-- -3'
miRNA:   3'- -GUCGCUGCCGG--UGGUguUGGGGAcau -5'
13984 3' -58.8 NC_003521.1 + 146193 0.72 0.545654
Target:  5'- cCGGCgGACGGCCcuucaacugcgACCACAucCCCCUGc- -3'
miRNA:   3'- -GUCG-CUGCCGG-----------UGGUGUu-GGGGACau -5'
13984 3' -58.8 NC_003521.1 + 167680 0.72 0.545654
Target:  5'- aGGCGGCGccGCCGCCGCuGCCCCcgccGUGc -3'
miRNA:   3'- gUCGCUGC--CGGUGGUGuUGGGGa---CAU- -5'
13984 3' -58.8 NC_003521.1 + 36018 0.72 0.555279
Target:  5'- aGGUGGCGGCC-CCACGACCguCUUGg- -3'
miRNA:   3'- gUCGCUGCCGGuGGUGUUGG--GGACau -5'
13984 3' -58.8 NC_003521.1 + 130639 0.72 0.555279
Target:  5'- cCAGCGGCcuCCACCcCAACCuCCUGUGc -3'
miRNA:   3'- -GUCGCUGccGGUGGuGUUGG-GGACAU- -5'
13984 3' -58.8 NC_003521.1 + 130003 0.71 0.574671
Target:  5'- cCGGCGGCGGCgCGCaACGGCCgCUGg- -3'
miRNA:   3'- -GUCGCUGCCG-GUGgUGUUGGgGACau -5'
13984 3' -58.8 NC_003521.1 + 85554 0.71 0.583449
Target:  5'- cCAGCGACGggccugaggcgccGCCGCCGCcGCCCCc--- -3'
miRNA:   3'- -GUCGCUGC-------------CGGUGGUGuUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 127784 0.71 0.584426
Target:  5'- gGGCGGCGGCCguaGCCGCAcguGCUCCaUGa- -3'
miRNA:   3'- gUCGCUGCCGG---UGGUGU---UGGGG-ACau -5'
13984 3' -58.8 NC_003521.1 + 85393 0.71 0.584426
Target:  5'- cCAGCGGguCGGCCAgcuCgCACAGCUCCUGg- -3'
miRNA:   3'- -GUCGCU--GCCGGU---G-GUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 142937 0.71 0.593234
Target:  5'- gCAGCGGCGGUCagggucaGCgGgGGCCCCUGg- -3'
miRNA:   3'- -GUCGCUGCCGG-------UGgUgUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 120588 0.71 0.594214
Target:  5'- aCGGCG-CGGCCGCCG--GCUCCUGc- -3'
miRNA:   3'- -GUCGCuGCCGGUGGUguUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 99200 0.71 0.604027
Target:  5'- uCGGUGACGGCCGCgGCGcAgUCCUGg- -3'
miRNA:   3'- -GUCGCUGCCGGUGgUGU-UgGGGACau -5'
13984 3' -58.8 NC_003521.1 + 142351 0.71 0.613859
Target:  5'- -cGCcACGGCCGCCGCGGCCgCCg--- -3'
miRNA:   3'- guCGcUGCCGGUGGUGUUGG-GGacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.