miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 36018 0.72 0.555279
Target:  5'- aGGUGGCGGCC-CCACGACCguCUUGg- -3'
miRNA:   3'- gUCGCUGCCGGuGGUGUUGG--GGACau -5'
13984 3' -58.8 NC_003521.1 + 43498 0.69 0.740193
Target:  5'- -cGCGGCGGCCAacauCCGuCAGCgCCUGc- -3'
miRNA:   3'- guCGCUGCCGGU----GGU-GUUGgGGACau -5'
13984 3' -58.8 NC_003521.1 + 44810 0.73 0.46202
Target:  5'- gAGCgGAUGGCCggagggcgacacGCCACAGCUCCUGg- -3'
miRNA:   3'- gUCG-CUGCCGG------------UGGUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 45630 0.68 0.776917
Target:  5'- -cGCaGACGGCCACCGCcgccGGCUCCg--- -3'
miRNA:   3'- guCG-CUGCCGGUGGUG----UUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 49578 0.66 0.851785
Target:  5'- -cGCGugGGCCGCgGCGccGCCuCCUc-- -3'
miRNA:   3'- guCGCugCCGGUGgUGU--UGG-GGAcau -5'
13984 3' -58.8 NC_003521.1 + 50799 0.66 0.859269
Target:  5'- uCGGCGACGGUgAUgGCAGcgguguCCCCgGUGg -3'
miRNA:   3'- -GUCGCUGCCGgUGgUGUU------GGGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 52526 0.67 0.820065
Target:  5'- gCGGCGAagaaGaGCCGCCAaagaGGCCCCUc-- -3'
miRNA:   3'- -GUCGCUg---C-CGGUGGUg---UUGGGGAcau -5'
13984 3' -58.8 NC_003521.1 + 52792 0.68 0.784933
Target:  5'- aGGCGGCGGugcggcuCCACCugGACCgCCUu-- -3'
miRNA:   3'- gUCGCUGCC-------GGUGGugUUGG-GGAcau -5'
13984 3' -58.8 NC_003521.1 + 52981 0.7 0.663074
Target:  5'- gCGGUGAggaaGGCCGuCCGCAACgCCCUGc- -3'
miRNA:   3'- -GUCGCUg---CCGGU-GGUGUUG-GGGACau -5'
13984 3' -58.8 NC_003521.1 + 53197 0.67 0.820065
Target:  5'- cCAGCGGCGcGCgGCC-CGGCucgCCCUGg- -3'
miRNA:   3'- -GUCGCUGC-CGgUGGuGUUG---GGGACau -5'
13984 3' -58.8 NC_003521.1 + 54188 0.67 0.803228
Target:  5'- -cGCGACGucgacuugccGCCACCACcgccgccgccguAGCCCUUGUc -3'
miRNA:   3'- guCGCUGC----------CGGUGGUG------------UUGGGGACAu -5'
13984 3' -58.8 NC_003521.1 + 55917 0.66 0.880561
Target:  5'- aCGGCGGCGGCaacggggguGCCAgCGggguaugagGCCUCUGUGg -3'
miRNA:   3'- -GUCGCUGCCGg--------UGGU-GU---------UGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 56609 0.66 0.859269
Target:  5'- -cGCGuAUGGCCGCCACGuCCCagagGUc -3'
miRNA:   3'- guCGC-UGCCGGUGGUGUuGGGga--CAu -5'
13984 3' -58.8 NC_003521.1 + 59610 0.77 0.304314
Target:  5'- aCGGCGAuCGGCCAUCGCAGuuCCUGg- -3'
miRNA:   3'- -GUCGCU-GCCGGUGGUGUUggGGACau -5'
13984 3' -58.8 NC_003521.1 + 59613 0.67 0.836269
Target:  5'- uGGCGGCGGCCccgGCgGCGACCgCg--- -3'
miRNA:   3'- gUCGCUGCCGG---UGgUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 60747 0.68 0.785818
Target:  5'- aCGGCGGCGGCaguCGCCGCGGgagaauCCCCg--- -3'
miRNA:   3'- -GUCGCUGCCG---GUGGUGUU------GGGGacau -5'
13984 3' -58.8 NC_003521.1 + 61233 0.69 0.696265
Target:  5'- gCAGCGGCaGCCugcagaacuucauucGCCACAcgcGCCUCUGUu -3'
miRNA:   3'- -GUCGCUGcCGG---------------UGGUGU---UGGGGACAu -5'
13984 3' -58.8 NC_003521.1 + 63039 0.7 0.68265
Target:  5'- cCAGCGGacaggccccguCGGCCcuggcgacgACCGCGACCCC-GUAc -3'
miRNA:   3'- -GUCGCU-----------GCCGG---------UGGUGUUGGGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 65713 0.7 0.672877
Target:  5'- aCAGCGGC-GCCGCgGCGGCCCUg--- -3'
miRNA:   3'- -GUCGCUGcCGGUGgUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 66317 0.77 0.318065
Target:  5'- cCAGCG-CGGCCAUCGCGGCCCUg--- -3'
miRNA:   3'- -GUCGCuGCCGGUGGUGUUGGGGacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.