miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 166 0.67 0.828249
Target:  5'- aCGGCucCGGCCGCCGCuucggccUCCCUGc- -3'
miRNA:   3'- -GUCGcuGCCGGUGGUGuu-----GGGGACau -5'
13984 3' -58.8 NC_003521.1 + 2018 0.66 0.859269
Target:  5'- aCGGCGuCGcGCC-CCACAACUcguccgcugcuaCCUGUGc -3'
miRNA:   3'- -GUCGCuGC-CGGuGGUGUUGG------------GGACAU- -5'
13984 3' -58.8 NC_003521.1 + 2277 0.7 0.643406
Target:  5'- cCAG-GACGGCCACCucuACCCgCUGg- -3'
miRNA:   3'- -GUCgCUGCCGGUGGuguUGGG-GACau -5'
13984 3' -58.8 NC_003521.1 + 3641 0.66 0.859269
Target:  5'- cUAGCGugccACGGCCGCCGCcgucuGCCUCg--- -3'
miRNA:   3'- -GUCGC----UGCCGGUGGUGu----UGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 5318 0.69 0.740193
Target:  5'- gGGCGGCGuGCCccgccgGCCGCGACUCCg--- -3'
miRNA:   3'- gUCGCUGC-CGG------UGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 5546 0.69 0.730772
Target:  5'- cCGGCG-CGGCCGCCGCcAUCgUUGUu -3'
miRNA:   3'- -GUCGCuGCCGGUGGUGuUGGgGACAu -5'
13984 3' -58.8 NC_003521.1 + 6092 0.66 0.859269
Target:  5'- gCGGCGGCGuuCCGCCACGGCUaUCUGg- -3'
miRNA:   3'- -GUCGCUGCc-GGUGGUGUUGG-GGACau -5'
13984 3' -58.8 NC_003521.1 + 16794 0.66 0.859269
Target:  5'- gGGCGACGGCgccCGCCcCGACCgCCgGg- -3'
miRNA:   3'- gUCGCUGCCG---GUGGuGUUGG-GGaCau -5'
13984 3' -58.8 NC_003521.1 + 16878 0.68 0.785818
Target:  5'- -uGCGuuccccGCGGCCGCCuCGACCCCc--- -3'
miRNA:   3'- guCGC------UGCCGGUGGuGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 18886 0.75 0.377671
Target:  5'- gCAGCGACGaggacgaggcGCCGCgGCAGCCCCgaaggGUGg -3'
miRNA:   3'- -GUCGCUGC----------CGGUGgUGUUGGGGa----CAU- -5'
13984 3' -58.8 NC_003521.1 + 27079 0.68 0.785818
Target:  5'- -cGUGGCcGCCACCACGGCCUuCUGc- -3'
miRNA:   3'- guCGCUGcCGGUGGUGUUGGG-GACau -5'
13984 3' -58.8 NC_003521.1 + 27213 0.7 0.68265
Target:  5'- gCGGCGACcGCCACCcCAACagCCUGg- -3'
miRNA:   3'- -GUCGCUGcCGGUGGuGUUGg-GGACau -5'
13984 3' -58.8 NC_003521.1 + 28150 0.67 0.844116
Target:  5'- uGGCGACGGCgGcgaccaugcCCGCGACgCCCUc-- -3'
miRNA:   3'- gUCGCUGCCGgU---------GGUGUUG-GGGAcau -5'
13984 3' -58.8 NC_003521.1 + 29368 0.66 0.866564
Target:  5'- -uGCGaacccGCGGCCGcgguacCCugGuuGCCCCUGUGg -3'
miRNA:   3'- guCGC-----UGCCGGU------GGugU--UGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 29899 0.66 0.866564
Target:  5'- gGGCGACGaCgACCgACGACCCgUGg- -3'
miRNA:   3'- gUCGCUGCcGgUGG-UGUUGGGgACau -5'
13984 3' -58.8 NC_003521.1 + 29937 0.67 0.820065
Target:  5'- uGGC-ACGGCCACCgagGCGACguacaCCCUGg- -3'
miRNA:   3'- gUCGcUGCCGGUGG---UGUUG-----GGGACau -5'
13984 3' -58.8 NC_003521.1 + 31311 0.77 0.297611
Target:  5'- gCGGCGACGGUCACCGUGACCCCc--- -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 31616 0.68 0.794591
Target:  5'- uCAGCuGGCagGGCCACCGCGGCCgaCgGUGg -3'
miRNA:   3'- -GUCG-CUG--CCGGUGGUGUUGGg-GaCAU- -5'
13984 3' -58.8 NC_003521.1 + 33021 0.66 0.859269
Target:  5'- gGGCGACGGCUucgACCGCGAg--CUGUAg -3'
miRNA:   3'- gUCGCUGCCGG---UGGUGUUgggGACAU- -5'
13984 3' -58.8 NC_003521.1 + 34648 0.66 0.866564
Target:  5'- -cGCGGCccuGGCCGCC-CuGCUCCUGg- -3'
miRNA:   3'- guCGCUG---CCGGUGGuGuUGGGGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.