miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 122818 0.66 0.859269
Target:  5'- gCAGCGACacGCCGCCGCuACCgucgucguCCUGa- -3'
miRNA:   3'- -GUCGCUGc-CGGUGGUGuUGG--------GGACau -5'
13984 3' -58.8 NC_003521.1 + 180082 0.66 0.851785
Target:  5'- gCGGCGACuGCCGCCGCcgUUCUUGc- -3'
miRNA:   3'- -GUCGCUGcCGGUGGUGuuGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 55917 0.66 0.880561
Target:  5'- aCGGCGGCGGCaacggggguGCCAgCGggguaugagGCCUCUGUGg -3'
miRNA:   3'- -GUCGCUGCCGg--------UGGU-GU---------UGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 6092 0.66 0.859269
Target:  5'- gCGGCGGCGuuCCGCCACGGCUaUCUGg- -3'
miRNA:   3'- -GUCGCUGCc-GGUGGUGUUGG-GGACau -5'
13984 3' -58.8 NC_003521.1 + 90990 0.66 0.859269
Target:  5'- uGGCGACGGUUACCugGCAACCacgUUGa- -3'
miRNA:   3'- gUCGCUGCCGGUGG--UGUUGGg--GACau -5'
13984 3' -58.8 NC_003521.1 + 3641 0.66 0.859269
Target:  5'- cUAGCGugccACGGCCGCCGCcgucuGCCUCg--- -3'
miRNA:   3'- -GUCGC----UGCCGGUGGUGu----UGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 151082 0.66 0.859269
Target:  5'- -cGCGcCGGCUGCCGuCAccGCCCCcGUGc -3'
miRNA:   3'- guCGCuGCCGGUGGU-GU--UGGGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 117963 0.66 0.859269
Target:  5'- gCGGCGGCGGCCAgCACcAGCgCUa--- -3'
miRNA:   3'- -GUCGCUGCCGGUgGUG-UUGgGGacau -5'
13984 3' -58.8 NC_003521.1 + 130135 0.66 0.859269
Target:  5'- uCGGCGGC-GCCGCCGCuGCCgCCa--- -3'
miRNA:   3'- -GUCGCUGcCGGUGGUGuUGG-GGacau -5'
13984 3' -58.8 NC_003521.1 + 164637 0.66 0.880561
Target:  5'- -cGCGACcGCCuCC-CGACCCgUGUGu -3'
miRNA:   3'- guCGCUGcCGGuGGuGUUGGGgACAU- -5'
13984 3' -58.8 NC_003521.1 + 133779 0.66 0.871554
Target:  5'- -cGCGGCGGaguuuuuccuCCACCGCAagacuaugaaggugGCCgCCUGUc -3'
miRNA:   3'- guCGCUGCC----------GGUGGUGU--------------UGG-GGACAu -5'
13984 3' -58.8 NC_003521.1 + 151202 0.66 0.859269
Target:  5'- -cGCGACGGUCACCACcacgguGACCgCg--- -3'
miRNA:   3'- guCGCUGCCGGUGGUG------UUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 140870 0.66 0.866564
Target:  5'- uCGGcCGAgGcGCCGCCGCc-CCCCUGc- -3'
miRNA:   3'- -GUC-GCUgC-CGGUGGUGuuGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 56609 0.66 0.859269
Target:  5'- -cGCGuAUGGCCGCCACGuCCCagagGUc -3'
miRNA:   3'- guCGC-UGCCGGUGGUGUuGGGga--CAu -5'
13984 3' -58.8 NC_003521.1 + 131047 0.66 0.859269
Target:  5'- gGGCGGCGGCgGCgG--GCCUCUGg- -3'
miRNA:   3'- gUCGCUGCCGgUGgUguUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 100474 0.66 0.859269
Target:  5'- uGGUGACGGCCguuGCUACcGCCgCCagGUGg -3'
miRNA:   3'- gUCGCUGCCGG---UGGUGuUGG-GGa-CAU- -5'
13984 3' -58.8 NC_003521.1 + 137307 0.66 0.866564
Target:  5'- uGGCG-CGGCUGCUgcgcgGCGACCCCg--- -3'
miRNA:   3'- gUCGCuGCCGGUGG-----UGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 202246 0.66 0.859269
Target:  5'- aCGGCGuCGcGCC-CCACAACUcguccgcugcuaCCUGUGc -3'
miRNA:   3'- -GUCGCuGC-CGGuGGUGUUGG------------GGACAU- -5'
13984 3' -58.8 NC_003521.1 + 155247 0.66 0.872259
Target:  5'- -cGUG-CGGCCccccaguuccauCCGCAACCCCUcGUAc -3'
miRNA:   3'- guCGCuGCCGGu-----------GGUGUUGGGGA-CAU- -5'
13984 3' -58.8 NC_003521.1 + 49578 0.66 0.851785
Target:  5'- -cGCGugGGCCGCgGCGccGCCuCCUc-- -3'
miRNA:   3'- guCGCugCCGGUGgUGU--UGG-GGAcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.