miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 209985 0.71 0.623705
Target:  5'- aCGGCccaGACGGCCACCAgCGuCCCgUGUu -3'
miRNA:   3'- -GUCG---CUGCCGGUGGU-GUuGGGgACAu -5'
13984 3' -58.8 NC_003521.1 + 130639 0.72 0.555279
Target:  5'- cCAGCGGCcuCCACCcCAACCuCCUGUGc -3'
miRNA:   3'- -GUCGCUGccGGUGGuGUUGG-GGACAU- -5'
13984 3' -58.8 NC_003521.1 + 130003 0.71 0.574671
Target:  5'- cCGGCGGCGGCgCGCaACGGCCgCUGg- -3'
miRNA:   3'- -GUCGCUGCCG-GUGgUGUUGGgGACau -5'
13984 3' -58.8 NC_003521.1 + 85554 0.71 0.583449
Target:  5'- cCAGCGACGggccugaggcgccGCCGCCGCcGCCCCc--- -3'
miRNA:   3'- -GUCGCUGC-------------CGGUGGUGuUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 127784 0.71 0.584426
Target:  5'- gGGCGGCGGCCguaGCCGCAcguGCUCCaUGa- -3'
miRNA:   3'- gUCGCUGCCGG---UGGUGU---UGGGG-ACau -5'
13984 3' -58.8 NC_003521.1 + 142937 0.71 0.593234
Target:  5'- gCAGCGGCGGUCagggucaGCgGgGGCCCCUGg- -3'
miRNA:   3'- -GUCGCUGCCGG-------UGgUgUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 120588 0.71 0.594214
Target:  5'- aCGGCG-CGGCCGCCG--GCUCCUGc- -3'
miRNA:   3'- -GUCGCuGCCGGUGGUguUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 142351 0.71 0.613859
Target:  5'- -cGCcACGGCCGCCGCGGCCgCCg--- -3'
miRNA:   3'- guCGcUGCCGGUGGUGUUGG-GGacau -5'
13984 3' -58.8 NC_003521.1 + 114956 0.71 0.623705
Target:  5'- gCAGCGGCGGCUGCUGCGGCgucagucgCCUGUu -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGg-------GGACAu -5'
13984 3' -58.8 NC_003521.1 + 36018 0.72 0.555279
Target:  5'- aGGUGGCGGCC-CCACGACCguCUUGg- -3'
miRNA:   3'- gUCGCUGCCGGuGGUGUUGG--GGACau -5'
13984 3' -58.8 NC_003521.1 + 68424 0.72 0.545654
Target:  5'- gCGGCGACGGCUccGCCGgcGCCCCUc-- -3'
miRNA:   3'- -GUCGCUGCCGG--UGGUguUGGGGAcau -5'
13984 3' -58.8 NC_003521.1 + 146193 0.72 0.545654
Target:  5'- cCGGCgGACGGCCcuucaacugcgACCACAucCCCCUGc- -3'
miRNA:   3'- -GUCG-CUGCCGG-----------UGGUGUu-GGGGACau -5'
13984 3' -58.8 NC_003521.1 + 115397 0.76 0.339559
Target:  5'- gGGCGcggGCGGCCGCCACGGCCUCcGg- -3'
miRNA:   3'- gUCGC---UGCCGGUGGUGUUGGGGaCau -5'
13984 3' -58.8 NC_003521.1 + 156571 0.76 0.346953
Target:  5'- cCAGCGACcGCCAUCGCAuccACCCCgagGUGg -3'
miRNA:   3'- -GUCGCUGcCGGUGGUGU---UGGGGa--CAU- -5'
13984 3' -58.8 NC_003521.1 + 226910 0.75 0.385631
Target:  5'- cCAGCG-CGGCCuCCGCGGCCCCc--- -3'
miRNA:   3'- -GUCGCuGCCGGuGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 74696 0.74 0.443469
Target:  5'- gCAGCGACGGCggCGCCGCGGCagcggcuCCCUGc- -3'
miRNA:   3'- -GUCGCUGCCG--GUGGUGUUG-------GGGACau -5'
13984 3' -58.8 NC_003521.1 + 78148 0.73 0.480061
Target:  5'- gCGGCGGCGGCCGCgaacgaggCACGAUCCUgGUGg -3'
miRNA:   3'- -GUCGCUGCCGGUG--------GUGUUGGGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 116770 0.72 0.517124
Target:  5'- gCAGCGugGGCCgccGCCGCGGCaCgCUGg- -3'
miRNA:   3'- -GUCGCugCCGG---UGGUGUUG-GgGACau -5'
13984 3' -58.8 NC_003521.1 + 152471 0.72 0.517124
Target:  5'- aGGCGGCGGCCACgAUcuCCCCg--- -3'
miRNA:   3'- gUCGCUGCCGGUGgUGuuGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 225593 0.72 0.517124
Target:  5'- uCGGCGGCcucgcgcucGGCCGCCuGCAGCCCCa--- -3'
miRNA:   3'- -GUCGCUG---------CCGGUGG-UGUUGGGGacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.