miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 202751 1.06 0.003817
Target:  5'- cCAGCGACGGCCACCACAACCCCUGUAc -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 159238 0.73 0.508679
Target:  5'- aAGaUGACGGCCACCuuccucuccaagaaGACCCCUGUu -3'
miRNA:   3'- gUC-GCUGCCGGUGGug------------UUGGGGACAu -5'
13984 3' -58.8 NC_003521.1 + 85393 0.71 0.584426
Target:  5'- cCAGCGGguCGGCCAgcuCgCACAGCUCCUGg- -3'
miRNA:   3'- -GUCGCU--GCCGGU---G-GUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 55917 0.66 0.880561
Target:  5'- aCGGCGGCGGCaacggggguGCCAgCGggguaugagGCCUCUGUGg -3'
miRNA:   3'- -GUCGCUGCCGg--------UGGU-GU---------UGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 197189 0.77 0.297611
Target:  5'- cCGGCGGCGGCCGCCGCcuCCuCCUcGUc -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGuuGG-GGA-CAu -5'
13984 3' -58.8 NC_003521.1 + 59610 0.77 0.304314
Target:  5'- aCGGCGAuCGGCCAUCGCAGuuCCUGg- -3'
miRNA:   3'- -GUCGCU-GCCGGUGGUGUUggGGACau -5'
13984 3' -58.8 NC_003521.1 + 103658 0.76 0.339559
Target:  5'- uCGGCGGCGGCCGCUGCGGCCgCg--- -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 196957 0.76 0.362086
Target:  5'- gGGCGACGGCCcgggagccgGCCGgGGCgCCUGUGa -3'
miRNA:   3'- gUCGCUGCCGG---------UGGUgUUGgGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 44810 0.73 0.46202
Target:  5'- gAGCgGAUGGCCggagggcgacacGCCACAGCUCCUGg- -3'
miRNA:   3'- gUCG-CUGCCGG------------UGGUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 98471 0.73 0.507745
Target:  5'- gCGGCGGCGGCCGCgGCGGCCgUg--- -3'
miRNA:   3'- -GUCGCUGCCGGUGgUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 98427 0.73 0.470997
Target:  5'- cCAG-GGCGGCCaggGCCGCGGCCuCCUGg- -3'
miRNA:   3'- -GUCgCUGCCGG---UGGUGUUGG-GGACau -5'
13984 3' -58.8 NC_003521.1 + 122618 0.75 0.393701
Target:  5'- aCGGCGGCGGCCGCgCGCucggcGGCCCCg--- -3'
miRNA:   3'- -GUCGCUGCCGGUG-GUG-----UUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 115011 0.79 0.215584
Target:  5'- gCAGaCGuuuACGGCCACgCACAACCCCUGg- -3'
miRNA:   3'- -GUC-GC---UGCCGGUG-GUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 201916 0.73 0.480061
Target:  5'- aGGCGGCGGCCAUCcgaaACAAUCCCa--- -3'
miRNA:   3'- gUCGCUGCCGGUGG----UGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 197352 0.79 0.220737
Target:  5'- cCAGC-ACGGCCGCCGCGcugGCCCgCUGUGa -3'
miRNA:   3'- -GUCGcUGCCGGUGGUGU---UGGG-GACAU- -5'
13984 3' -58.8 NC_003521.1 + 18886 0.75 0.377671
Target:  5'- gCAGCGACGaggacgaggcGCCGCgGCAGCCCCgaaggGUGg -3'
miRNA:   3'- -GUCGCUGC----------CGGUGgUGUUGGGGa----CAU- -5'
13984 3' -58.8 NC_003521.1 + 223613 0.73 0.506811
Target:  5'- -cGCGACGGCgacgcucuucucuCGCCAUAGCCCCgacGUGc -3'
miRNA:   3'- guCGCUGCCG-------------GUGGUGUUGGGGa--CAU- -5'
13984 3' -58.8 NC_003521.1 + 167680 0.72 0.545654
Target:  5'- aGGCGGCGccGCCGCCGCuGCCCCcgccGUGc -3'
miRNA:   3'- gUCGCUGC--CGGUGGUGuUGGGGa---CAU- -5'
13984 3' -58.8 NC_003521.1 + 31311 0.77 0.297611
Target:  5'- gCGGCGACGGUCACCGUGACCCCc--- -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 66317 0.77 0.318065
Target:  5'- cCAGCG-CGGCCAUCGCGGCCCUg--- -3'
miRNA:   3'- -GUCGCuGCCGGUGGUGUUGGGGacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.