miRNA display CGI


Results 1 - 20 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 202751 1.06 0.003817
Target:  5'- cCAGCGACGGCCACCACAACCCCUGUAc -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 115011 0.79 0.215584
Target:  5'- gCAGaCGuuuACGGCCACgCACAACCCCUGg- -3'
miRNA:   3'- -GUC-GC---UGCCGGUG-GUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 197352 0.79 0.220737
Target:  5'- cCAGC-ACGGCCGCCGCGcugGCCCgCUGUGa -3'
miRNA:   3'- -GUCGcUGCCGGUGGUGU---UGGG-GACAU- -5'
13984 3' -58.8 NC_003521.1 + 71280 0.78 0.265816
Target:  5'- aGGCGGgGGCCGCgGCAcggGCCCCUGg- -3'
miRNA:   3'- gUCGCUgCCGGUGgUGU---UGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 31311 0.77 0.297611
Target:  5'- gCGGCGACGGUCACCGUGACCCCc--- -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 197189 0.77 0.297611
Target:  5'- cCGGCGGCGGCCGCCGCcuCCuCCUcGUc -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGuuGG-GGA-CAu -5'
13984 3' -58.8 NC_003521.1 + 59610 0.77 0.304314
Target:  5'- aCGGCGAuCGGCCAUCGCAGuuCCUGg- -3'
miRNA:   3'- -GUCGCU-GCCGGUGGUGUUggGGACau -5'
13984 3' -58.8 NC_003521.1 + 66317 0.77 0.318065
Target:  5'- cCAGCG-CGGCCAUCGCGGCCCUg--- -3'
miRNA:   3'- -GUCGCuGCCGGUGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 103658 0.76 0.339559
Target:  5'- uCGGCGGCGGCCGCUGCGGCCgCg--- -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 115397 0.76 0.339559
Target:  5'- gGGCGcggGCGGCCGCCACGGCCUCcGg- -3'
miRNA:   3'- gUCGC---UGCCGGUGGUGUUGGGGaCau -5'
13984 3' -58.8 NC_003521.1 + 156571 0.76 0.346953
Target:  5'- cCAGCGACcGCCAUCGCAuccACCCCgagGUGg -3'
miRNA:   3'- -GUCGCUGcCGGUGGUGU---UGGGGa--CAU- -5'
13984 3' -58.8 NC_003521.1 + 196957 0.76 0.362086
Target:  5'- gGGCGACGGCCcgggagccgGCCGgGGCgCCUGUGa -3'
miRNA:   3'- gUCGCUGCCGG---------UGGUgUUGgGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 18886 0.75 0.377671
Target:  5'- gCAGCGACGaggacgaggcGCCGCgGCAGCCCCgaaggGUGg -3'
miRNA:   3'- -GUCGCUGC----------CGGUGgUGUUGGGGa----CAU- -5'
13984 3' -58.8 NC_003521.1 + 226910 0.75 0.385631
Target:  5'- cCAGCG-CGGCCuCCGCGGCCCCc--- -3'
miRNA:   3'- -GUCGCuGCCGGuGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 122618 0.75 0.393701
Target:  5'- aCGGCGGCGGCCGCgCGCucggcGGCCCCg--- -3'
miRNA:   3'- -GUCGCUGCCGGUG-GUG-----UUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 74696 0.74 0.443469
Target:  5'- gCAGCGACGGCggCGCCGCGGCagcggcuCCCUGc- -3'
miRNA:   3'- -GUCGCUGCCG--GUGGUGUUG-------GGGACau -5'
13984 3' -58.8 NC_003521.1 + 44810 0.73 0.46202
Target:  5'- gAGCgGAUGGCCggagggcgacacGCCACAGCUCCUGg- -3'
miRNA:   3'- gUCG-CUGCCGG------------UGGUGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 136976 0.73 0.46202
Target:  5'- cCAGCcugGACgaGGCCGagaCGCGGCCCCUGUAc -3'
miRNA:   3'- -GUCG---CUG--CCGGUg--GUGUUGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 98427 0.73 0.470997
Target:  5'- cCAG-GGCGGCCaggGCCGCGGCCuCCUGg- -3'
miRNA:   3'- -GUCgCUGCCGG---UGGUGUUGG-GGACau -5'
13984 3' -58.8 NC_003521.1 + 78148 0.73 0.480061
Target:  5'- gCGGCGGCGGCCGCgaacgaggCACGAUCCUgGUGg -3'
miRNA:   3'- -GUCGCUGCCGGUG--------GUGUUGGGGaCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.