miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 240715 0.67 0.828249
Target:  5'- aCGGCucCGGCCGCCGCuucggccUCCCUGc- -3'
miRNA:   3'- -GUCGcuGCCGGUGGUGuu-----GGGGACau -5'
13984 3' -58.8 NC_003521.1 + 235319 0.69 0.721274
Target:  5'- -uGCGACGGCUA-CACcGCCUCUGg- -3'
miRNA:   3'- guCGCUGCCGGUgGUGuUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 226910 0.75 0.385631
Target:  5'- cCAGCG-CGGCCuCCGCGGCCCCc--- -3'
miRNA:   3'- -GUCGCuGCCGGuGGUGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 226372 0.67 0.836269
Target:  5'- gAGCGGCGGCUgacgccGCCGCAgGgCCgUGUGc -3'
miRNA:   3'- gUCGCUGCCGG------UGGUGU-UgGGgACAU- -5'
13984 3' -58.8 NC_003521.1 + 225593 0.72 0.517124
Target:  5'- uCGGCGGCcucgcgcucGGCCGCCuGCAGCCCCa--- -3'
miRNA:   3'- -GUCGCUG---------CCGGUGG-UGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 224027 0.68 0.785818
Target:  5'- cCGGCGgucgggGCGGgCGCCGucGCCCCUGg- -3'
miRNA:   3'- -GUCGC------UGCCgGUGGUguUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 223613 0.73 0.506811
Target:  5'- -cGCGACGGCgacgcucuucucuCGCCAUAGCCCCgacGUGc -3'
miRNA:   3'- guCGCUGCCG-------------GUGGUGUUGGGGa--CAU- -5'
13984 3' -58.8 NC_003521.1 + 223359 0.68 0.780492
Target:  5'- uCGGCGGCGGCCuuggucagcagcgacAUCGCGgcGCCCCg--- -3'
miRNA:   3'- -GUCGCUGCCGG---------------UGGUGU--UGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 217617 0.68 0.794591
Target:  5'- gGGCGucuCGGCCGCCAUcuCCUCggcGUGg -3'
miRNA:   3'- gUCGCu--GCCGGUGGUGuuGGGGa--CAU- -5'
13984 3' -58.8 NC_003521.1 + 217284 0.68 0.789343
Target:  5'- aGGCGcUGGCCACCACcaccgacagggugguGACCaCgCUGUAg -3'
miRNA:   3'- gUCGCuGCCGGUGGUG---------------UUGG-G-GACAU- -5'
13984 3' -58.8 NC_003521.1 + 215506 0.67 0.844116
Target:  5'- -cGUGcCGGCCACCugGaagacgaccGCCCCguagGUGu -3'
miRNA:   3'- guCGCuGCCGGUGGugU---------UGGGGa---CAU- -5'
13984 3' -58.8 NC_003521.1 + 215030 0.68 0.776917
Target:  5'- gCAGCugaugGugGGCUgcaGCCGCGuggaGCCCCUGg- -3'
miRNA:   3'- -GUCG-----CugCCGG---UGGUGU----UGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 209985 0.71 0.623705
Target:  5'- aCGGCccaGACGGCCACCAgCGuCCCgUGUu -3'
miRNA:   3'- -GUCG---CUGCCGGUGGU-GUuGGGgACAu -5'
13984 3' -58.8 NC_003521.1 + 209901 0.66 0.873662
Target:  5'- aCGGCGACGuGCC-CCAgGACCgCUc-- -3'
miRNA:   3'- -GUCGCUGC-CGGuGGUgUUGGgGAcau -5'
13984 3' -58.8 NC_003521.1 + 209740 0.67 0.828249
Target:  5'- gCAGCGGCaGCCACgGCAGCCggaGUAc -3'
miRNA:   3'- -GUCGCUGcCGGUGgUGUUGGggaCAU- -5'
13984 3' -58.8 NC_003521.1 + 204776 0.67 0.844116
Target:  5'- aCAG-GACGGCCaaaGCCACGugCCg-GUAa -3'
miRNA:   3'- -GUCgCUGCCGG---UGGUGUugGGgaCAU- -5'
13984 3' -58.8 NC_003521.1 + 204744 0.66 0.866564
Target:  5'- uGGUGAUGgaggcGCCGCCGCcGCCCUguUGUGu -3'
miRNA:   3'- gUCGCUGC-----CGGUGGUGuUGGGG--ACAU- -5'
13984 3' -58.8 NC_003521.1 + 203786 0.68 0.776917
Target:  5'- gUAGCuGuCGGCCGCCGacgagGACUCCUGUc -3'
miRNA:   3'- -GUCG-CuGCCGGUGGUg----UUGGGGACAu -5'
13984 3' -58.8 NC_003521.1 + 202751 1.06 0.003817
Target:  5'- cCAGCGACGGCCACCACAACCCCUGUAc -3'
miRNA:   3'- -GUCGCUGCCGGUGGUGUUGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 202505 0.7 0.643406
Target:  5'- cCAG-GACGGCCACCucuACCCgCUGg- -3'
miRNA:   3'- -GUCgCUGCCGGUGGuguUGGG-GACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.