miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 5' -54.9 NC_003521.1 + 213862 0.66 0.959656
Target:  5'- ---cGCUGCAG-GGcGUccAUGGCACCc- -3'
miRNA:   3'- auuuCGACGUCaCC-CA--UGCCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 123183 0.66 0.959291
Target:  5'- --cGGCgGCGG-GGGaccguaggccgcaUACGGCGCCGGg -3'
miRNA:   3'- auuUCGaCGUCaCCC-------------AUGCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 125841 0.66 0.955907
Target:  5'- -cGGGCUcGCGGUGGucGUACaGCGCCu- -3'
miRNA:   3'- auUUCGA-CGUCACC--CAUGcCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 155398 0.66 0.955907
Target:  5'- cGAGGCcgGCGG-GGGgcugGGCACCGGa -3'
miRNA:   3'- aUUUCGa-CGUCaCCCaug-CCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 150468 0.66 0.95552
Target:  5'- cUGGGGCgGCgagcgccuGGUGGGgcccuucagcuuuUACGGCGCCGg -3'
miRNA:   3'- -AUUUCGaCG--------UCACCC-------------AUGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 59150 0.66 0.95552
Target:  5'- aAAAGCUGguGgaucagcUGcGGcACGGCGCCGc -3'
miRNA:   3'- aUUUCGACguC-------AC-CCaUGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 117362 0.66 0.95552
Target:  5'- cGGAGCUGacgcccagccugaCGGUGcaGGUGCGGCACg-- -3'
miRNA:   3'- aUUUCGAC-------------GUCAC--CCAUGCCGUGguu -5'
13985 5' -54.9 NC_003521.1 + 49563 0.66 0.951929
Target:  5'- aAGAGCaccaccUGCcgcGUGGGccGCGGCGCCGc -3'
miRNA:   3'- aUUUCG------ACGu--CACCCa-UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 160301 0.66 0.947718
Target:  5'- --cGGCaagGCGGUGGGcACGGcCAUCGGa -3'
miRNA:   3'- auuUCGa--CGUCACCCaUGCC-GUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 100165 0.66 0.947718
Target:  5'- uUGAGGUcGUug-GGGUAgGGCGCCAGg -3'
miRNA:   3'- -AUUUCGaCGucaCCCAUgCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 73132 0.66 0.947718
Target:  5'- ---uGCUGCAcGgcgGGGgcagcggcgGCGGCGCCGc -3'
miRNA:   3'- auuuCGACGU-Ca--CCCa--------UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 208849 0.66 0.943269
Target:  5'- aGGAGCUGUAcaUGcGGcuggACGGCACCAu -3'
miRNA:   3'- aUUUCGACGUc-AC-CCa---UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 77033 0.66 0.943269
Target:  5'- uUGAGGCcgGCGGUGG---UGGCGCCGc -3'
miRNA:   3'- -AUUUCGa-CGUCACCcauGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 237674 0.66 0.942811
Target:  5'- --uAGUcggGCAGUGGuaucguaGUACGGUACCGGg -3'
miRNA:   3'- auuUCGa--CGUCACC-------CAUGCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 137781 0.67 0.937127
Target:  5'- ---uGuCUGCAGcaccugcgcaugucUGGGUACGGCuACCGu -3'
miRNA:   3'- auuuC-GACGUC--------------ACCCAUGCCG-UGGUu -5'
13985 5' -54.9 NC_003521.1 + 7567 0.67 0.93365
Target:  5'- aAGAGCaGC-GUGGGUACGGUGaCGAg -3'
miRNA:   3'- aUUUCGaCGuCACCCAUGCCGUgGUU- -5'
13985 5' -54.9 NC_003521.1 + 213926 0.67 0.923062
Target:  5'- gAAAGCUGC-GUGGacgGCGGuCACCu- -3'
miRNA:   3'- aUUUCGACGuCACCca-UGCC-GUGGuu -5'
13985 5' -54.9 NC_003521.1 + 50506 0.67 0.911501
Target:  5'- --cGGCgGCGGUGGaG-AUGGUACCAAu -3'
miRNA:   3'- auuUCGaCGUCACC-CaUGCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 215435 0.68 0.905359
Target:  5'- gUGAAGCagaGCcGcGGGUGCuGGCGCCAGg -3'
miRNA:   3'- -AUUUCGa--CGuCaCCCAUG-CCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 70254 0.68 0.905359
Target:  5'- -cGAGCUGguG-GGGUGCaGCACgGg -3'
miRNA:   3'- auUUCGACguCaCCCAUGcCGUGgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.