miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 3' -67.9 NC_003521.1 + 92260 0.66 0.484291
Target:  5'- uCCCUgGGUGCCGcugccGCUacCGGCCGGa- -3'
miRNA:   3'- cGGGAgCCGCGGCc----CGA--GCCGGCCgu -5'
13987 3' -67.9 NC_003521.1 + 13986 0.66 0.501464
Target:  5'- uGCCCggcgCGGCGgCGGGCgaGGaCCccauGGCGc -3'
miRNA:   3'- -CGGGa---GCCGCgGCCCGagCC-GG----CCGU- -5'
13987 3' -67.9 NC_003521.1 + 138008 0.66 0.501464
Target:  5'- -aUCUCGGCGUCGaGGUgcgcgugcgUCGcuGCCGGCGc -3'
miRNA:   3'- cgGGAGCCGCGGC-CCG---------AGC--CGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 108771 0.66 0.510151
Target:  5'- aCCCUaGGCGCUGaGGCgCGGCa-GCAg -3'
miRNA:   3'- cGGGAgCCGCGGC-CCGaGCCGgcCGU- -5'
13987 3' -67.9 NC_003521.1 + 99016 0.66 0.518899
Target:  5'- cGUCUUguagacgaUGGCGCC-GGCUCcgGGCCGGUc -3'
miRNA:   3'- -CGGGA--------GCCGCGGcCCGAG--CCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 73164 0.66 0.527707
Target:  5'- -gCCUCGGCcuGCgaccuggacgCGGaGCU-GGCCGGCAu -3'
miRNA:   3'- cgGGAGCCG--CG----------GCC-CGAgCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 104120 0.66 0.492843
Target:  5'- aGUCCUCGGCGgcguccugcUCGGGCccgcccugcUCGGUgcucugCGGCGg -3'
miRNA:   3'- -CGGGAGCCGC---------GGCCCG---------AGCCG------GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 36840 0.66 0.48344
Target:  5'- gGCgCUgCuGUGCCGGGUagagcaccugacgUgGGCCGGCAa -3'
miRNA:   3'- -CGgGA-GcCGCGGCCCG-------------AgCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 85387 0.66 0.492843
Target:  5'- -gCCUCacaaGCgGCUGcGCUUGGCCGGCAg -3'
miRNA:   3'- cgGGAGc---CG-CGGCcCGAGCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 234773 0.66 0.510151
Target:  5'- cGCCCUgCGGgGCCgcugGGGCaCGGCUuacucgucgGGCu -3'
miRNA:   3'- -CGGGA-GCCgCGG----CCCGaGCCGG---------CCGu -5'
13987 3' -67.9 NC_003521.1 + 117486 0.66 0.510151
Target:  5'- gGCCg-CGGCGCUGGGgccgucggugUUCGGaCGGCu -3'
miRNA:   3'- -CGGgaGCCGCGGCCC----------GAGCCgGCCGu -5'
13987 3' -67.9 NC_003521.1 + 100196 0.66 0.527707
Target:  5'- gGCUCUCGGCcguguaccGCUGcaGGUcguaGGCCGGCGa -3'
miRNA:   3'- -CGGGAGCCG--------CGGC--CCGag--CCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 123201 0.66 0.492843
Target:  5'- gGCCgCauaCGGCGCCGGGUaggacggGGgCGGCGg -3'
miRNA:   3'- -CGG-Ga--GCCGCGGCCCGag-----CCgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 111040 0.66 0.492843
Target:  5'- cGgCCUCGGCGCgcacgugcgCGGGacaGGCgCGGUAg -3'
miRNA:   3'- -CgGGAGCCGCG---------GCCCgagCCG-GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 128507 0.66 0.518899
Target:  5'- gGCCUgcgacagCGaGuCGCUGGGCaggugCGGCUGGCc -3'
miRNA:   3'- -CGGGa------GC-C-GCGGCCCGa----GCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 17485 0.66 0.510151
Target:  5'- gGCaCCgguagCGGCGCCGccggucacGGCgguuccCGGCCcGGCGg -3'
miRNA:   3'- -CG-GGa----GCCGCGGC--------CCGa-----GCCGG-CCGU- -5'
13987 3' -67.9 NC_003521.1 + 237164 0.66 0.527707
Target:  5'- gGUCC-CGGcCGCCGaGGCagacggcggCGGCCguGGCAc -3'
miRNA:   3'- -CGGGaGCC-GCGGC-CCGa--------GCCGG--CCGU- -5'
13987 3' -67.9 NC_003521.1 + 127323 0.66 0.510151
Target:  5'- cGCUCUCGGUgacgGCCaugaGGGC-CaGGCCGGgAa -3'
miRNA:   3'- -CGGGAGCCG----CGG----CCCGaG-CCGGCCgU- -5'
13987 3' -67.9 NC_003521.1 + 172305 0.66 0.510151
Target:  5'- cGUCCggugucggUGGCGCCaGGC-CGGUcgCGGCGg -3'
miRNA:   3'- -CGGGa-------GCCGCGGcCCGaGCCG--GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 79738 0.66 0.484291
Target:  5'- cGCCgacaCUCGuaccgacaucaGCGCCGGGC-CGGugaggaCCGGCGu -3'
miRNA:   3'- -CGG----GAGC-----------CGCGGCCCGaGCC------GGCCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.