Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13987 | 3' | -67.9 | NC_003521.1 | + | 92260 | 0.66 | 0.484291 |
Target: 5'- uCCCUgGGUGCCGcugccGCUacCGGCCGGa- -3' miRNA: 3'- cGGGAgCCGCGGCc----CGA--GCCGGCCgu -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 13986 | 0.66 | 0.501464 |
Target: 5'- uGCCCggcgCGGCGgCGGGCgaGGaCCccauGGCGc -3' miRNA: 3'- -CGGGa---GCCGCgGCCCGagCC-GG----CCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 138008 | 0.66 | 0.501464 |
Target: 5'- -aUCUCGGCGUCGaGGUgcgcgugcgUCGcuGCCGGCGc -3' miRNA: 3'- cgGGAGCCGCGGC-CCG---------AGC--CGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 108771 | 0.66 | 0.510151 |
Target: 5'- aCCCUaGGCGCUGaGGCgCGGCa-GCAg -3' miRNA: 3'- cGGGAgCCGCGGC-CCGaGCCGgcCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 99016 | 0.66 | 0.518899 |
Target: 5'- cGUCUUguagacgaUGGCGCC-GGCUCcgGGCCGGUc -3' miRNA: 3'- -CGGGA--------GCCGCGGcCCGAG--CCGGCCGu -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 73164 | 0.66 | 0.527707 |
Target: 5'- -gCCUCGGCcuGCgaccuggacgCGGaGCU-GGCCGGCAu -3' miRNA: 3'- cgGGAGCCG--CG----------GCC-CGAgCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 104120 | 0.66 | 0.492843 |
Target: 5'- aGUCCUCGGCGgcguccugcUCGGGCccgcccugcUCGGUgcucugCGGCGg -3' miRNA: 3'- -CGGGAGCCGC---------GGCCCG---------AGCCG------GCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 36840 | 0.66 | 0.48344 |
Target: 5'- gGCgCUgCuGUGCCGGGUagagcaccugacgUgGGCCGGCAa -3' miRNA: 3'- -CGgGA-GcCGCGGCCCG-------------AgCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 85387 | 0.66 | 0.492843 |
Target: 5'- -gCCUCacaaGCgGCUGcGCUUGGCCGGCAg -3' miRNA: 3'- cgGGAGc---CG-CGGCcCGAGCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 234773 | 0.66 | 0.510151 |
Target: 5'- cGCCCUgCGGgGCCgcugGGGCaCGGCUuacucgucgGGCu -3' miRNA: 3'- -CGGGA-GCCgCGG----CCCGaGCCGG---------CCGu -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 117486 | 0.66 | 0.510151 |
Target: 5'- gGCCg-CGGCGCUGGGgccgucggugUUCGGaCGGCu -3' miRNA: 3'- -CGGgaGCCGCGGCCC----------GAGCCgGCCGu -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 100196 | 0.66 | 0.527707 |
Target: 5'- gGCUCUCGGCcguguaccGCUGcaGGUcguaGGCCGGCGa -3' miRNA: 3'- -CGGGAGCCG--------CGGC--CCGag--CCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 123201 | 0.66 | 0.492843 |
Target: 5'- gGCCgCauaCGGCGCCGGGUaggacggGGgCGGCGg -3' miRNA: 3'- -CGG-Ga--GCCGCGGCCCGag-----CCgGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 111040 | 0.66 | 0.492843 |
Target: 5'- cGgCCUCGGCGCgcacgugcgCGGGacaGGCgCGGUAg -3' miRNA: 3'- -CgGGAGCCGCG---------GCCCgagCCG-GCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 128507 | 0.66 | 0.518899 |
Target: 5'- gGCCUgcgacagCGaGuCGCUGGGCaggugCGGCUGGCc -3' miRNA: 3'- -CGGGa------GC-C-GCGGCCCGa----GCCGGCCGu -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 17485 | 0.66 | 0.510151 |
Target: 5'- gGCaCCgguagCGGCGCCGccggucacGGCgguuccCGGCCcGGCGg -3' miRNA: 3'- -CG-GGa----GCCGCGGC--------CCGa-----GCCGG-CCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 237164 | 0.66 | 0.527707 |
Target: 5'- gGUCC-CGGcCGCCGaGGCagacggcggCGGCCguGGCAc -3' miRNA: 3'- -CGGGaGCC-GCGGC-CCGa--------GCCGG--CCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 127323 | 0.66 | 0.510151 |
Target: 5'- cGCUCUCGGUgacgGCCaugaGGGC-CaGGCCGGgAa -3' miRNA: 3'- -CGGGAGCCG----CGG----CCCGaG-CCGGCCgU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 172305 | 0.66 | 0.510151 |
Target: 5'- cGUCCggugucggUGGCGCCaGGC-CGGUcgCGGCGg -3' miRNA: 3'- -CGGGa-------GCCGCGGcCCGaGCCG--GCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 79738 | 0.66 | 0.484291 |
Target: 5'- cGCCgacaCUCGuaccgacaucaGCGCCGGGC-CGGugaggaCCGGCGu -3' miRNA: 3'- -CGG----GAGC-----------CGCGGCCCGaGCC------GGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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