Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13987 | 3' | -67.9 | NC_003521.1 | + | 201380 | 1.08 | 0.000529 |
Target: 5'- gGCCCUCGGCGCCGGGCUCGGCCGGCAg -3' miRNA: 3'- -CGGGAGCCGCGGCCCGAGCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 111100 | 0.83 | 0.039736 |
Target: 5'- cGCgCUCGGCGUcgaCGGGCcgCGGCCGGCAg -3' miRNA: 3'- -CGgGAGCCGCG---GCCCGa-GCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 169285 | 0.82 | 0.044892 |
Target: 5'- cGUCUUCGGCGgCGGGCucggugacgUCGGCCGGCGu -3' miRNA: 3'- -CGGGAGCCGCgGCCCG---------AGCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 210732 | 0.81 | 0.05453 |
Target: 5'- aGCCCUCGGCGCUGcuaccGUgagCGGCCGGCGg -3' miRNA: 3'- -CGGGAGCCGCGGCc----CGa--GCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 214808 | 0.8 | 0.067777 |
Target: 5'- cGCCgUCgGGCGCCGGGCgCGGCgaCGGCGg -3' miRNA: 3'- -CGGgAG-CCGCGGCCCGaGCCG--GCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 118912 | 0.77 | 0.09699 |
Target: 5'- cGCCCucgUCGGCGCCGcGGCgUGGgCGGCGg -3' miRNA: 3'- -CGGG---AGCCGCGGC-CCGaGCCgGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 122509 | 0.76 | 0.117105 |
Target: 5'- gGCCaacgCGGCGgCGGGCa-GGCCGGCGg -3' miRNA: 3'- -CGGga--GCCGCgGCCCGagCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 213018 | 0.76 | 0.12271 |
Target: 5'- -aCCaUGGCGCCGGGCgagcCGGCCGaGCGg -3' miRNA: 3'- cgGGaGCCGCGGCCCGa---GCCGGC-CGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 221796 | 0.73 | 0.193929 |
Target: 5'- uUCCUCGGCGggcaUGGGCUCcGUCGGCGg -3' miRNA: 3'- cGGGAGCCGCg---GCCCGAGcCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 129084 | 0.73 | 0.193929 |
Target: 5'- aCCCUCGGCGUacugcaggcugUGGGUggCGuGCCGGCGc -3' miRNA: 3'- cGGGAGCCGCG-----------GCCCGa-GC-CGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 176065 | 0.73 | 0.198305 |
Target: 5'- cGCCC--GGUGCCGcGC-CGGCCGGCGu -3' miRNA: 3'- -CGGGagCCGCGGCcCGaGCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 29707 | 0.73 | 0.202767 |
Target: 5'- cGUCCUCGGCGCCuGGCUgcUGaGCCucGGCGc -3' miRNA: 3'- -CGGGAGCCGCGGcCCGA--GC-CGG--CCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 55736 | 0.73 | 0.204576 |
Target: 5'- aGCgCCUCccaGCGCgCGGGCggcagcgacaggcgCGGCCGGCGg -3' miRNA: 3'- -CG-GGAGc--CGCG-GCCCGa-------------GCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 196975 | 0.72 | 0.216679 |
Target: 5'- cGgCCggGGCGCCugugacGGGCccgCGGCCGGCGg -3' miRNA: 3'- -CgGGagCCGCGG------CCCGa--GCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 239661 | 0.72 | 0.226401 |
Target: 5'- uCCCguaggCGGCGCCGuGGCUCccggGGaCGGCAg -3' miRNA: 3'- cGGGa----GCCGCGGC-CCGAG----CCgGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 39434 | 0.72 | 0.226401 |
Target: 5'- uCCCguaggCGGCGCCGuGGCUCccggGGaCGGCAg -3' miRNA: 3'- cGGGa----GCCGCGGC-CCGAG----CCgGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 167154 | 0.72 | 0.2314 |
Target: 5'- cGCCUUgGGCGCCucGGGCgucuuggaggCGGCCgcGGCGg -3' miRNA: 3'- -CGGGAgCCGCGG--CCCGa---------GCCGG--CCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 56244 | 0.72 | 0.236491 |
Target: 5'- uGCCaugUCGGgGCUGaGGCa-GGCCGGCAg -3' miRNA: 3'- -CGGg--AGCCgCGGC-CCGagCCGGCCGU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 237388 | 0.72 | 0.241676 |
Target: 5'- uGCCCUCGGCGUC-GGCaUGGCgGGgGu -3' miRNA: 3'- -CGGGAGCCGCGGcCCGaGCCGgCCgU- -5' |
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13987 | 3' | -67.9 | NC_003521.1 | + | 235473 | 0.72 | 0.241676 |
Target: 5'- gGCCCUCucacgGGCuuaccacuaucGCCGGaGUcgCGGCCGGCGg -3' miRNA: 3'- -CGGGAG-----CCG-----------CGGCC-CGa-GCCGGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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