miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 3' -67.9 NC_003521.1 + 142261 0.7 0.3179
Target:  5'- cUCCUCGGCcgacUCGGGCUCGgGCUGGg- -3'
miRNA:   3'- cGGGAGCCGc---GGCCCGAGC-CGGCCgu -5'
13987 3' -67.9 NC_003521.1 + 211388 0.71 0.274211
Target:  5'- gGCCgUCaGGCGCCGGcuCUCGugcagcaGCCGGCGc -3'
miRNA:   3'- -CGGgAG-CCGCGGCCc-GAGC-------CGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 239865 0.71 0.274792
Target:  5'- gGCCuCUCGuugcgcccacuuGCGCauGGCUCGGCUGGUg -3'
miRNA:   3'- -CGG-GAGC------------CGCGgcCCGAGCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 24425 0.7 0.280652
Target:  5'- aGCCagaCGGCGCagGGGC-CGGCgGGCu -3'
miRNA:   3'- -CGGga-GCCGCGg-CCCGaGCCGgCCGu -5'
13987 3' -67.9 NC_003521.1 + 200296 0.7 0.280652
Target:  5'- uUCCgcggCGGCGUgcggCGGGC-CGGCCGGUc -3'
miRNA:   3'- cGGGa---GCCGCG----GCCCGaGCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 100565 0.7 0.283024
Target:  5'- cGCCCUCGGCGuCCgacuuaccgccguagGGGC-CGGUggacgaggCGGCGa -3'
miRNA:   3'- -CGGGAGCCGC-GG---------------CCCGaGCCG--------GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 207350 0.7 0.292669
Target:  5'- uCCCUCGG-GUC-GGCgCGGCCGGCc -3'
miRNA:   3'- cGGGAGCCgCGGcCCGaGCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 88644 0.7 0.298827
Target:  5'- aGCCCagcgaGGCGCagaGGGCcgccaggucggUgGGCCGGCGg -3'
miRNA:   3'- -CGGGag---CCGCGg--CCCG-----------AgCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 86242 0.7 0.305085
Target:  5'- aGCuCCUUGacGUGCaGGGCgaagUCGGCCGGCGa -3'
miRNA:   3'- -CG-GGAGC--CGCGgCCCG----AGCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 88460 0.71 0.273053
Target:  5'- -gCCUCGGCGUCGGGCUgCagcgaguugaagagGGUgGGCGg -3'
miRNA:   3'- cgGGAGCCGCGGCCCGA-G--------------CCGgCCGU- -5'
13987 3' -67.9 NC_003521.1 + 226929 0.71 0.257799
Target:  5'- cCCCUCcGCGCCGGGCccccCGGCgaaauccauggCGGCGc -3'
miRNA:   3'- cGGGAGcCGCGGCCCGa---GCCG-----------GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 65716 0.71 0.252329
Target:  5'- ----gCGGCGCCGcGGCggcccUGGCCGGCAa -3'
miRNA:   3'- cgggaGCCGCGGC-CCGa----GCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 118912 0.77 0.09699
Target:  5'- cGCCCucgUCGGCGCCGcGGCgUGGgCGGCGg -3'
miRNA:   3'- -CGGG---AGCCGCGGC-CCGaGCCgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 213018 0.76 0.12271
Target:  5'- -aCCaUGGCGCCGGGCgagcCGGCCGaGCGg -3'
miRNA:   3'- cgGGaGCCGCGGCCCGa---GCCGGC-CGU- -5'
13987 3' -67.9 NC_003521.1 + 221796 0.73 0.193929
Target:  5'- uUCCUCGGCGggcaUGGGCUCcGUCGGCGg -3'
miRNA:   3'- cGGGAGCCGCg---GCCCGAGcCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 55736 0.73 0.204576
Target:  5'- aGCgCCUCccaGCGCgCGGGCggcagcgacaggcgCGGCCGGCGg -3'
miRNA:   3'- -CG-GGAGc--CGCG-GCCCGa-------------GCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 239661 0.72 0.226401
Target:  5'- uCCCguaggCGGCGCCGuGGCUCccggGGaCGGCAg -3'
miRNA:   3'- cGGGa----GCCGCGGC-CCGAG----CCgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 56244 0.72 0.236491
Target:  5'- uGCCaugUCGGgGCUGaGGCa-GGCCGGCAg -3'
miRNA:   3'- -CGGg--AGCCgCGGC-CCGagCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 235473 0.72 0.241676
Target:  5'- gGCCCUCucacgGGCuuaccacuaucGCCGGaGUcgCGGCCGGCGg -3'
miRNA:   3'- -CGGGAG-----CCG-----------CGGCC-CGa-GCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 43131 0.71 0.246955
Target:  5'- aGCgCUCGGCGCUGGGCguggaggugcaCGcGCUGGUg -3'
miRNA:   3'- -CGgGAGCCGCGGCCCGa----------GC-CGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.