miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 198507 1.07 0.00336
Target:  5'- aAAGCGGGGGAGCGGGGCCAAAAACAGg -3'
miRNA:   3'- -UUCGCCCCCUCGCCCCGGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 148631 0.79 0.223211
Target:  5'- gGGGCGGGGGAGgGGaGGCC-AGGGCAu -3'
miRNA:   3'- -UUCGCCCCCUCgCC-CCGGuUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 91365 0.78 0.269085
Target:  5'- cGGUGGGGGAG-GGGGCCGAAcccCGGg -3'
miRNA:   3'- uUCGCCCCCUCgCCCCGGUUUuu-GUC- -5'
13990 3' -58.4 NC_003521.1 + 5658 0.73 0.477749
Target:  5'- cGGCGGaGGGuGgGGGGUCGAGAcACGGg -3'
miRNA:   3'- uUCGCC-CCCuCgCCCCGGUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 46400 0.73 0.515027
Target:  5'- -uGCGuGGGGcGCGcGGGCCAgGAAGCGGc -3'
miRNA:   3'- uuCGC-CCCCuCGC-CCCGGU-UUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 98235 0.73 0.486948
Target:  5'- gAGGCGGGGaGGCGGGGgCGGccACGGc -3'
miRNA:   3'- -UUCGCCCCcUCGCCCCgGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 103645 0.73 0.505591
Target:  5'- cAGCGGGGGcagcucGGCGGcGGCCGcu-GCGGc -3'
miRNA:   3'- uUCGCCCCC------UCGCC-CCGGUuuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 93970 0.73 0.509357
Target:  5'- uGGGCGGGaGGGGCGGaGGCgAGgacgaggcgccccccAGACAGg -3'
miRNA:   3'- -UUCGCCC-CCUCGCC-CCGgUU---------------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 6597 0.73 0.486948
Target:  5'- aGAGUGauGGGGcGCGGGGCCAAGuAACGu -3'
miRNA:   3'- -UUCGC--CCCCuCGCCCCGGUUU-UUGUc -5'
13990 3' -58.4 NC_003521.1 + 68190 0.72 0.55343
Target:  5'- cAAGCGGGGGcGCGuGaGGaCCGAGGACGu -3'
miRNA:   3'- -UUCGCCCCCuCGC-C-CC-GGUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 196886 0.72 0.534106
Target:  5'- -cGCGGGuGAGgcCGGGGCgGAAGGCGGg -3'
miRNA:   3'- uuCGCCCcCUC--GCCCCGgUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 150019 0.71 0.622354
Target:  5'- gGGGaaGGGGGGgGGGGCUggGGAgGGg -3'
miRNA:   3'- -UUCgcCCCCUCgCCCCGGuuUUUgUC- -5'
13990 3' -58.4 NC_003521.1 + 37392 0.71 0.59264
Target:  5'- gAGGCGGcGGGGGCGcccGGGCCuuGugcGACGGc -3'
miRNA:   3'- -UUCGCC-CCCUCGC---CCCGGuuU---UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 154291 0.71 0.582782
Target:  5'- gGAGCGGGGcGGCacggcguccGGGGCCGAc-GCGGg -3'
miRNA:   3'- -UUCGCCCCcUCG---------CCCCGGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 202739 0.7 0.691581
Target:  5'- cGGCaGGGGcGCGGGGaCCccguguGGAACAGa -3'
miRNA:   3'- uUCGcCCCCuCGCCCC-GGu-----UUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 38230 0.7 0.652129
Target:  5'- aGGGCGGccucGGcGGGCGGGGCgGAGAcGCGGc -3'
miRNA:   3'- -UUCGCC----CC-CUCGCCCCGgUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 186930 0.7 0.691581
Target:  5'- cGGUGGcGGGGGCGGcGGCgAAcgcaacucGAGCAGc -3'
miRNA:   3'- uUCGCC-CCCUCGCC-CCGgUU--------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 120953 0.7 0.662034
Target:  5'- cGAGgGGcaGGGGGCGGGGCgGuuuGCGGu -3'
miRNA:   3'- -UUCgCC--CCCUCGCCCCGgUuuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 238458 0.7 0.652129
Target:  5'- aGGGCGGccucGGcGGGCGGGGCgGAGAcGCGGc -3'
miRNA:   3'- -UUCGCC----CC-CUCGCCCCGgUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 176924 0.7 0.652129
Target:  5'- uGGGCGGGGGucGUGGGGCgGu---CAGc -3'
miRNA:   3'- -UUCGCCCCCu-CGCCCCGgUuuuuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.