miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 5' -54.5 NC_003521.1 + 198555 1.09 0.005826
Target:  5'- gGGCCGCUUCUGGCUCUUUCUACCGCUu -3'
miRNA:   3'- -CCGGCGAAGACCGAGAAAGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 74661 0.75 0.597487
Target:  5'- cGCCGCUcggccCUGcGCUCgcUCUACCGCa -3'
miRNA:   3'- cCGGCGAa----GAC-CGAGaaAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 212866 0.75 0.647898
Target:  5'- cGCCGC--CUGGCg-UUUCUACCGCg -3'
miRNA:   3'- cCGGCGaaGACCGagAAAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 212513 0.73 0.737156
Target:  5'- aGGCCGCgccgGGgUCg--CUGCCGCUg -3'
miRNA:   3'- -CCGGCGaagaCCgAGaaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 188294 0.71 0.818365
Target:  5'- gGGCCuCUUUggcGGCUCUUcuucgccgcgcucUCUACCGCc -3'
miRNA:   3'- -CCGGcGAAGa--CCGAGAA-------------AGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 53721 0.71 0.827614
Target:  5'- cGUgGCUUCUGGCUCgacUCcAUCGCg -3'
miRNA:   3'- cCGgCGAAGACCGAGaa-AGaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 107756 0.71 0.835841
Target:  5'- cGGCUGCga-UGGCUgUgaCUGCUGCUg -3'
miRNA:   3'- -CCGGCGaagACCGAgAaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 162082 0.7 0.864662
Target:  5'- uGGCCGUgcccgacgacaacucCUGGC-CgcUCUACCGCUg -3'
miRNA:   3'- -CCGGCGaa-------------GACCGaGaaAGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 190373 0.7 0.866881
Target:  5'- cGCgGCUUUcGGCUCcgUCcACCGCUg -3'
miRNA:   3'- cCGgCGAAGaCCGAGaaAGaUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 133817 0.7 0.866881
Target:  5'- uGGCCGCcugUCUGGCgcugaugCUgaaCUGCCuGCa -3'
miRNA:   3'- -CCGGCGa--AGACCGa------GAaa-GAUGG-CGa -5'
13990 5' -54.5 NC_003521.1 + 18702 0.7 0.866881
Target:  5'- uGGCCgGCgcgaUCcGGCUgUggCUGCCGCUg -3'
miRNA:   3'- -CCGG-CGa---AGaCCGAgAaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 177062 0.7 0.881193
Target:  5'- uGGuuGUagaggUUCUGGCUCUUcucccUCUGUCGCUg -3'
miRNA:   3'- -CCggCG-----AAGACCGAGAA-----AGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 139324 0.7 0.888029
Target:  5'- cGGCCGCgUCUGGC-Cg--CcGCUGCUc -3'
miRNA:   3'- -CCGGCGaAGACCGaGaaaGaUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 150710 0.69 0.894645
Target:  5'- cGGCgGCgaCUGGCUCUcg--GCCGUg -3'
miRNA:   3'- -CCGgCGaaGACCGAGAaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 25077 0.69 0.901037
Target:  5'- cGGCaaCGCgucgUCgGGCUCcuugCUGCCGCUu -3'
miRNA:   3'- -CCG--GCGa---AGaCCGAGaaa-GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 136562 0.69 0.907204
Target:  5'- cGCCGCcgaCUGGCag---CUGCCGCUg -3'
miRNA:   3'- cCGGCGaa-GACCGagaaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 143564 0.69 0.909607
Target:  5'- aGCCGCcaucgCUGGCgggcacgggcgUCUACCGCg -3'
miRNA:   3'- cCGGCGaa---GACCGagaa-------AGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 77975 0.69 0.91885
Target:  5'- cGGCCGCg---GGCUCgccgUUCUGCaCGa- -3'
miRNA:   3'- -CCGGCGaagaCCGAGa---AAGAUG-GCga -5'
13990 5' -54.5 NC_003521.1 + 233034 0.68 0.92645
Target:  5'- uGCCGCUUCgagcgcugguguaaGGCUCg-UCUGCgGCg -3'
miRNA:   3'- cCGGCGAAGa-------------CCGAGaaAGAUGgCGa -5'
13990 5' -54.5 NC_003521.1 + 80013 0.68 0.929568
Target:  5'- gGGCgGCUUCUGcugcggcuGCUgUUUCUuguuGCUGCUg -3'
miRNA:   3'- -CCGgCGAAGAC--------CGAgAAAGA----UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.