miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 5' -54.5 NC_003521.1 + 114313 0.66 0.977408
Target:  5'- cGCCGCggacCUgGGCU---UCUGCCGCc -3'
miRNA:   3'- cCGGCGaa--GA-CCGAgaaAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 121686 0.67 0.952318
Target:  5'- gGGCUcCUUCcacUGGUUCUg-CUGCCGCg -3'
miRNA:   3'- -CCGGcGAAG---ACCGAGAaaGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 97491 0.67 0.952318
Target:  5'- aGCCGCcaUCggUGGCggCUgucUCUACCGCg -3'
miRNA:   3'- cCGGCGa-AG--ACCGa-GAa--AGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 70127 0.67 0.959839
Target:  5'- gGGCCGCUaUCagGGcCUCgagCUGCgGCg -3'
miRNA:   3'- -CCGGCGA-AGa-CC-GAGaaaGAUGgCGa -5'
13990 5' -54.5 NC_003521.1 + 156398 0.67 0.959839
Target:  5'- gGGCCGCUUC--GC-CaccCUGCCGCUg -3'
miRNA:   3'- -CCGGCGAAGacCGaGaaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 181329 0.66 0.96952
Target:  5'- aGGgCGCcgUCUGGUUCUguagCUGCaGCg -3'
miRNA:   3'- -CCgGCGa-AGACCGAGAaa--GAUGgCGa -5'
13990 5' -54.5 NC_003521.1 + 129940 0.66 0.97234
Target:  5'- uGGCCGagac-GGCgcagUUCUGCCGCg -3'
miRNA:   3'- -CCGGCgaagaCCGaga-AAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 99709 0.66 0.974967
Target:  5'- cGGCCGCUUCUgcaggucgcaGGCgucgUCgcgcacccaGCCGCUc -3'
miRNA:   3'- -CCGGCGAAGA----------CCGagaaAGa--------UGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 129966 0.66 0.975965
Target:  5'- gGGCCGCU----GCUCUacgugcaccgucgCUGCCGCUg -3'
miRNA:   3'- -CCGGCGAagacCGAGAaa-----------GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 74405 0.68 0.943906
Target:  5'- cGCCGggUCUGGCUCUac--AUCGCg -3'
miRNA:   3'- cCGGCgaAGACCGAGAaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 70654 0.68 0.939358
Target:  5'- cGCUGCggCUGGUgCUgcagCUGCUGCUg -3'
miRNA:   3'- cCGGCGaaGACCGaGAaa--GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 172986 0.68 0.9316
Target:  5'- gGGCCGcCUUCUGGgUCgcggggCUcacuugaggggagcaGCCGCg -3'
miRNA:   3'- -CCGGC-GAAGACCgAGaaa---GA---------------UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 53721 0.71 0.827614
Target:  5'- cGUgGCUUCUGGCUCgacUCcAUCGCg -3'
miRNA:   3'- cCGgCGAAGACCGAGaa-AGaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 133817 0.7 0.866881
Target:  5'- uGGCCGCcugUCUGGCgcugaugCUgaaCUGCCuGCa -3'
miRNA:   3'- -CCGGCGa--AGACCGa------GAaa-GAUGG-CGa -5'
13990 5' -54.5 NC_003521.1 + 18702 0.7 0.866881
Target:  5'- uGGCCgGCgcgaUCcGGCUgUggCUGCCGCUg -3'
miRNA:   3'- -CCGG-CGa---AGaCCGAgAaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 150710 0.69 0.894645
Target:  5'- cGGCgGCgaCUGGCUCUcg--GCCGUg -3'
miRNA:   3'- -CCGgCGaaGACCGAGAaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 136562 0.69 0.907204
Target:  5'- cGCCGCcgaCUGGCag---CUGCCGCUg -3'
miRNA:   3'- cCGGCGaa-GACCGagaaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 143564 0.69 0.909607
Target:  5'- aGCCGCcaucgCUGGCgggcacgggcgUCUACCGCg -3'
miRNA:   3'- cCGGCGaa---GACCGagaa-------AGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 233034 0.68 0.92645
Target:  5'- uGCCGCUUCgagcgcugguguaaGGCUCg-UCUGCgGCg -3'
miRNA:   3'- cCGGCGAAGa-------------CCGAGaaAGAUGgCGa -5'
13990 5' -54.5 NC_003521.1 + 80013 0.68 0.929568
Target:  5'- gGGCgGCUUCUGcugcggcuGCUgUUUCUuguuGCUGCUg -3'
miRNA:   3'- -CCGgCGAAGAC--------CGAgAAAGA----UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.