miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 5' -54.5 NC_003521.1 + 14643 0.67 0.963275
Target:  5'- aGCUGCagugcgUCUGGC-CcUUCUGCgCGCUg -3'
miRNA:   3'- cCGGCGa-----AGACCGaGaAAGAUG-GCGA- -5'
13990 5' -54.5 NC_003521.1 + 18702 0.7 0.866881
Target:  5'- uGGCCgGCgcgaUCcGGCUgUggCUGCCGCUg -3'
miRNA:   3'- -CCGG-CGa---AGaCCGAgAaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 19883 0.68 0.929568
Target:  5'- cGGCCGCgUC-GGCgCUgaucCUGCUGCUg -3'
miRNA:   3'- -CCGGCGaAGaCCGaGAaa--GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 25077 0.69 0.901037
Target:  5'- cGGCaaCGCgucgUCgGGCUCcuugCUGCCGCUu -3'
miRNA:   3'- -CCG--GCGa---AGaCCGAGaaa-GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 41154 0.66 0.97234
Target:  5'- cGCCGCgacuaCUGGCcuacgCgacUCUGCUGCUg -3'
miRNA:   3'- cCGGCGaa---GACCGa----Gaa-AGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 52565 0.67 0.957675
Target:  5'- cGUCGCUUCaucaucaagugcggcUGGCUCaaccgCUGCUGCg -3'
miRNA:   3'- cCGGCGAAG---------------ACCGAGaaa--GAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 53721 0.71 0.827614
Target:  5'- cGUgGCUUCUGGCUCgacUCcAUCGCg -3'
miRNA:   3'- cCGgCGAAGACCGAGaa-AGaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 70127 0.67 0.959839
Target:  5'- gGGCCGCUaUCagGGcCUCgagCUGCgGCg -3'
miRNA:   3'- -CCGGCGA-AGa-CC-GAGaaaGAUGgCGa -5'
13990 5' -54.5 NC_003521.1 + 70654 0.68 0.939358
Target:  5'- cGCUGCggCUGGUgCUgcagCUGCUGCUg -3'
miRNA:   3'- cCGGCGaaGACCGaGAaa--GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 72984 0.66 0.977408
Target:  5'- cGGCCGCggggGGC-CUg---GCCGCUc -3'
miRNA:   3'- -CCGGCGaagaCCGaGAaagaUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 74074 0.68 0.943906
Target:  5'- cGCCGCUgUCUGGCgggCgaggUCUuccCCGCc -3'
miRNA:   3'- cCGGCGA-AGACCGa--Gaa--AGAu--GGCGa -5'
13990 5' -54.5 NC_003521.1 + 74405 0.68 0.943906
Target:  5'- cGCCGggUCUGGCUCUac--AUCGCg -3'
miRNA:   3'- cCGGCgaAGACCGAGAaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 74661 0.75 0.597487
Target:  5'- cGCCGCUcggccCUGcGCUCgcUCUACCGCa -3'
miRNA:   3'- cCGGCGAa----GAC-CGAGaaAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 77975 0.69 0.91885
Target:  5'- cGGCCGCg---GGCUCgccgUUCUGCaCGa- -3'
miRNA:   3'- -CCGGCGaagaCCGAGa---AAGAUG-GCga -5'
13990 5' -54.5 NC_003521.1 + 80013 0.68 0.929568
Target:  5'- gGGCgGCUUCUGcugcggcuGCUgUUUCUuguuGCUGCUg -3'
miRNA:   3'- -CCGgCGAAGAC--------CGAgAAAGA----UGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 86768 0.66 0.977408
Target:  5'- cGGCUGCUgcacGGCUUUaugggcgcCUGCCGCg -3'
miRNA:   3'- -CCGGCGAaga-CCGAGAaa------GAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 88217 0.66 0.981756
Target:  5'- aGGCUGCUgagcuUCUGGCUCauguaGCCGa- -3'
miRNA:   3'- -CCGGCGA-----AGACCGAGaaagaUGGCga -5'
13990 5' -54.5 NC_003521.1 + 92411 0.66 0.97234
Target:  5'- cGGCCGCccgcaccaUGGCUCccUCgcacguggACCGCg -3'
miRNA:   3'- -CCGGCGaag-----ACCGAGaaAGa-------UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 97491 0.67 0.952318
Target:  5'- aGCCGCcaUCggUGGCggCUgucUCUACCGCg -3'
miRNA:   3'- cCGGCGa-AG--ACCGa-GAa--AGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 99709 0.66 0.974967
Target:  5'- cGGCCGCUUCUgcaggucgcaGGCgucgUCgcgcacccaGCCGCUc -3'
miRNA:   3'- -CCGGCGAAGA----------CCGagaaAGa--------UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.