miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 5' -57 NC_003521.1 + 198052 1.05 0.004722
Target:  5'- aCGGGCAGGUGCUUGAGCAGCAGCUUUu -3'
miRNA:   3'- -GCCCGUCCACGAACUCGUCGUCGAAA- -5'
13991 5' -57 NC_003521.1 + 102752 0.82 0.173895
Target:  5'- uGGGCAGGUGCacgcgguaGAGCGGCAGCg-- -3'
miRNA:   3'- gCCCGUCCACGaa------CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 15874 0.77 0.346403
Target:  5'- aCGGaGCuGGUGCUcuguaUGGGCGGCAGCa-- -3'
miRNA:   3'- -GCC-CGuCCACGA-----ACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 109326 0.75 0.403026
Target:  5'- uGGGCAGGcGgUUGAgGCGGCAGCa-- -3'
miRNA:   3'- gCCCGUCCaCgAACU-CGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 101483 0.75 0.420248
Target:  5'- uGGcGCgugAGGUGCUcGAGCAGCGGCg-- -3'
miRNA:   3'- gCC-CG---UCCACGAaCUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 107178 0.74 0.474455
Target:  5'- gGGGCAGGUccaGC---AGCAGCAGCUUc -3'
miRNA:   3'- gCCCGUCCA---CGaacUCGUCGUCGAAa -5'
13991 5' -57 NC_003521.1 + 15739 0.74 0.50284
Target:  5'- uGGuuccuGCAGGUGCgcccGGGCAGCAGCa-- -3'
miRNA:   3'- gCC-----CGUCCACGaa--CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 103066 0.73 0.541778
Target:  5'- aGGGCGGGUGCgcGGGCgagGGCuGCUg- -3'
miRNA:   3'- gCCCGUCCACGaaCUCG---UCGuCGAaa -5'
13991 5' -57 NC_003521.1 + 52232 0.72 0.571625
Target:  5'- aGGGCGGcGgGCUacaguUGGGCAGCGGCa-- -3'
miRNA:   3'- gCCCGUC-CaCGA-----ACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 228734 0.72 0.581667
Target:  5'- uCGGGCuGcGUGg-UGAGCAGCGGCg-- -3'
miRNA:   3'- -GCCCGuC-CACgaACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 226356 0.72 0.591744
Target:  5'- gCGGGUAGcGccGCggGAGCGGCGGCUg- -3'
miRNA:   3'- -GCCCGUC-Ca-CGaaCUCGUCGUCGAaa -5'
13991 5' -57 NC_003521.1 + 165651 0.71 0.632272
Target:  5'- uGGGCggcugguugguGGGaGCUUGAGCAGCucgguGCUUUu -3'
miRNA:   3'- gCCCG-----------UCCaCGAACUCGUCGu----CGAAA- -5'
13991 5' -57 NC_003521.1 + 186923 0.71 0.652564
Target:  5'- gGGGCGccGGUgGCggGGGCGGCGGCg-- -3'
miRNA:   3'- gCCCGU--CCA-CGaaCUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 181658 0.71 0.666735
Target:  5'- gGGGCAuGGUGCgcgGGGgagaucggagagagaCGGCAGCUUUa -3'
miRNA:   3'- gCCCGU-CCACGaa-CUC---------------GUCGUCGAAA- -5'
13991 5' -57 NC_003521.1 + 190530 0.71 0.672793
Target:  5'- aGGaGCgAGGUGCggcGGCAGCAGCg-- -3'
miRNA:   3'- gCC-CG-UCCACGaacUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 113400 0.7 0.682863
Target:  5'- gCGGGCGGGUGCgcaacuUUGAGUuucugguGCAGUa-- -3'
miRNA:   3'- -GCCCGUCCACG------AACUCGu------CGUCGaaa -5'
13991 5' -57 NC_003521.1 + 102667 0.7 0.702869
Target:  5'- uCGGGCAcGUGCUUGAGCAGgucgaaggggaaCAuGCUg- -3'
miRNA:   3'- -GCCCGUcCACGAACUCGUC------------GU-CGAaa -5'
13991 5' -57 NC_003521.1 + 150551 0.7 0.702869
Target:  5'- gCGGuGguGGUGCgggUGguGGCGGCGGCg-- -3'
miRNA:   3'- -GCC-CguCCACGa--AC--UCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 73117 0.7 0.712789
Target:  5'- cCGuGGCcacggAGGUGCUgcacggcggGGGCAGCGGCg-- -3'
miRNA:   3'- -GC-CCG-----UCCACGAa--------CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 183781 0.7 0.722642
Target:  5'- aCGGGCAGGacgagUGCcUGGGCGGCGuGUUc- -3'
miRNA:   3'- -GCCCGUCC-----ACGaACUCGUCGU-CGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.