Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13991 | 5' | -57 | NC_003521.1 | + | 127374 | 0.67 | 0.856299 |
Target: 5'- gCGcGGCAGGUGCgugaugaaGGGCGGCcacaGGCg-- -3' miRNA: 3'- -GC-CCGUCCACGaa------CUCGUCG----UCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 238443 | 0.69 | 0.770576 |
Target: 5'- uCGGGCAGGagGCgcaGGGCGGCcucGGCg-- -3' miRNA: 3'- -GCCCGUCCa-CGaa-CUCGUCG---UCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 155579 | 0.68 | 0.787147 |
Target: 5'- aGGaGguGGUGCagcagcaacgaGAGCAGCAGCa-- -3' miRNA: 3'- gCC-CguCCACGaa---------CUCGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 118741 | 0.68 | 0.788962 |
Target: 5'- aCGGGCugcAGGuUGCUggUGAGuCGGCGGCc-- -3' miRNA: 3'- -GCCCG---UCC-ACGA--ACUC-GUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 70246 | 0.68 | 0.815478 |
Target: 5'- -aGGCAGGgcgaGCUggUGGGguGCAGCa-- -3' miRNA: 3'- gcCCGUCCa---CGA--ACUCguCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 126505 | 0.68 | 0.824 |
Target: 5'- gGGGCAGGUGgccGAGUAGC-GCg-- -3' miRNA: 3'- gCCCGUCCACgaaCUCGUCGuCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 168422 | 0.68 | 0.824 |
Target: 5'- aGGGCGGGcgGCagGGccGCGGCGGCg-- -3' miRNA: 3'- gCCCGUCCa-CGaaCU--CGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 119516 | 0.68 | 0.832351 |
Target: 5'- cCGGGuCAGGUGCggguacgggUUGuGCcGCAGCa-- -3' miRNA: 3'- -GCCC-GUCCACG---------AACuCGuCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 163890 | 0.67 | 0.853982 |
Target: 5'- gGaGGCAGGUGCcgacggUGcguuacucgggugcGGCGGCAGCg-- -3' miRNA: 3'- gC-CCGUCCACGa-----AC--------------UCGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 123555 | 0.69 | 0.742108 |
Target: 5'- uCGGGCAGGUGCagcgccaGGCAgucguGCAGCg-- -3' miRNA: 3'- -GCCCGUCCACGaac----UCGU-----CGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 73117 | 0.7 | 0.712789 |
Target: 5'- cCGuGGCcacggAGGUGCUgcacggcggGGGCAGCGGCg-- -3' miRNA: 3'- -GC-CCG-----UCCACGAa--------CUCGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 102667 | 0.7 | 0.702869 |
Target: 5'- uCGGGCAcGUGCUUGAGCAGgucgaaggggaaCAuGCUg- -3' miRNA: 3'- -GCCCGUcCACGAACUCGUC------------GU-CGAaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 101483 | 0.75 | 0.420248 |
Target: 5'- uGGcGCgugAGGUGCUcGAGCAGCGGCg-- -3' miRNA: 3'- gCC-CG---UCCACGAaCUCGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 103066 | 0.73 | 0.541778 |
Target: 5'- aGGGCGGGUGCgcGGGCgagGGCuGCUg- -3' miRNA: 3'- gCCCGUCCACGaaCUCG---UCGuCGAaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 52232 | 0.72 | 0.571625 |
Target: 5'- aGGGCGGcGgGCUacaguUGGGCAGCGGCa-- -3' miRNA: 3'- gCCCGUC-CaCGA-----ACUCGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 228734 | 0.72 | 0.581667 |
Target: 5'- uCGGGCuGcGUGg-UGAGCAGCGGCg-- -3' miRNA: 3'- -GCCCGuC-CACgaACUCGUCGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 226356 | 0.72 | 0.591744 |
Target: 5'- gCGGGUAGcGccGCggGAGCGGCGGCUg- -3' miRNA: 3'- -GCCCGUC-Ca-CGaaCUCGUCGUCGAaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 181658 | 0.71 | 0.666735 |
Target: 5'- gGGGCAuGGUGCgcgGGGgagaucggagagagaCGGCAGCUUUa -3' miRNA: 3'- gCCCGU-CCACGaa-CUC---------------GUCGUCGAAA- -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 113400 | 0.7 | 0.682863 |
Target: 5'- gCGGGCGGGUGCgcaacuUUGAGUuucugguGCAGUa-- -3' miRNA: 3'- -GCCCGUCCACG------AACUCGu------CGUCGaaa -5' |
|||||||
13991 | 5' | -57 | NC_003521.1 | + | 150551 | 0.7 | 0.702869 |
Target: 5'- gCGGuGguGGUGCgggUGguGGCGGCGGCg-- -3' miRNA: 3'- -GCC-CguCCACGa--AC--UCGUCGUCGaaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home