miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 5' -57 NC_003521.1 + 15739 0.74 0.50284
Target:  5'- uGGuuccuGCAGGUGCgcccGGGCAGCAGCa-- -3'
miRNA:   3'- gCC-----CGUCCACGaa--CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 15874 0.77 0.346403
Target:  5'- aCGGaGCuGGUGCUcuguaUGGGCGGCAGCa-- -3'
miRNA:   3'- -GCC-CGuCCACGA-----ACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 38215 0.69 0.770576
Target:  5'- uCGGGCAGGagGCgcaGGGCGGCcucGGCg-- -3'
miRNA:   3'- -GCCCGUCCa-CGaa-CUCGUCG---UCGaaa -5'
13991 5' -57 NC_003521.1 + 43231 0.66 0.885414
Target:  5'- cCGGGCAGcGgggaaggGC--GAGUAGCAGCg-- -3'
miRNA:   3'- -GCCCGUC-Ca------CGaaCUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 46389 0.66 0.904337
Target:  5'- gGGGCgcgGGGUGCgugGGGCgcgcgggccaggaAGCGGCg-- -3'
miRNA:   3'- gCCCG---UCCACGaa-CUCG-------------UCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 46551 0.66 0.904956
Target:  5'- aGGGCcucgcgccGGGUGCUgaAGCGGUGGUUg- -3'
miRNA:   3'- gCCCG--------UCCACGAacUCGUCGUCGAaa -5'
13991 5' -57 NC_003521.1 + 52232 0.72 0.571625
Target:  5'- aGGGCGGcGgGCUacaguUGGGCAGCGGCa-- -3'
miRNA:   3'- gCCCGUC-CaCGA-----ACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 67062 0.67 0.871278
Target:  5'- uCGGGCgAGGagGUagaggagGAGCAGCAGCc-- -3'
miRNA:   3'- -GCCCG-UCCa-CGaa-----CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 69741 0.66 0.885414
Target:  5'- gCGGGCGGGgagGC---GGCGGUGGCa-- -3'
miRNA:   3'- -GCCCGUCCa--CGaacUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 70246 0.68 0.815478
Target:  5'- -aGGCAGGgcgaGCUggUGGGguGCAGCa-- -3'
miRNA:   3'- gcCCGUCCa---CGA--ACUCguCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 73117 0.7 0.712789
Target:  5'- cCGuGGCcacggAGGUGCUgcacggcggGGGCAGCGGCg-- -3'
miRNA:   3'- -GC-CCG-----UCCACGAa--------CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 88494 0.66 0.904956
Target:  5'- uGGGCGGGUa---GAGCGGCAcGCg-- -3'
miRNA:   3'- gCCCGUCCAcgaaCUCGUCGU-CGaaa -5'
13991 5' -57 NC_003521.1 + 92112 0.66 0.892153
Target:  5'- cCGGGUcggaacccccGGGUGCgguucGGGCGGCggGGCUUc -3'
miRNA:   3'- -GCCCG----------UCCACGaa---CUCGUCG--UCGAAa -5'
13991 5' -57 NC_003521.1 + 95090 0.67 0.878454
Target:  5'- gGGGCucGGGcGcCUUGAGCGGCcGCg-- -3'
miRNA:   3'- gCCCG--UCCaC-GAACUCGUCGuCGaaa -5'
13991 5' -57 NC_003521.1 + 95210 0.67 0.878454
Target:  5'- cCGGcacCGGGUGCgacuGCAGCAGCg-- -3'
miRNA:   3'- -GCCc--GUCCACGaacuCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 101483 0.75 0.420248
Target:  5'- uGGcGCgugAGGUGCUcGAGCAGCGGCg-- -3'
miRNA:   3'- gCC-CG---UCCACGAaCUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 101912 0.66 0.885414
Target:  5'- aGGGCAGGcGCaccGAGCGGCcGUg-- -3'
miRNA:   3'- gCCCGUCCaCGaa-CUCGUCGuCGaaa -5'
13991 5' -57 NC_003521.1 + 102667 0.7 0.702869
Target:  5'- uCGGGCAcGUGCUUGAGCAGgucgaaggggaaCAuGCUg- -3'
miRNA:   3'- -GCCCGUcCACGAACUCGUC------------GU-CGAaa -5'
13991 5' -57 NC_003521.1 + 102752 0.82 0.173895
Target:  5'- uGGGCAGGUGCacgcgguaGAGCGGCAGCg-- -3'
miRNA:   3'- gCCCGUCCACGaa------CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 103066 0.73 0.541778
Target:  5'- aGGGCGGGUGCgcGGGCgagGGCuGCUg- -3'
miRNA:   3'- gCCCGUCCACGaaCUCG---UCGuCGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.