miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 3' -62.3 NC_003521.1 + 196740 1.07 0.001714
Target:  5'- gCUGGGCCACCGGCUUGACCCGCAGGUa -3'
miRNA:   3'- -GACCCGGUGGCCGAACUGGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 86 0.68 0.594745
Target:  5'- -cGGGCCgGCCGGUcggacguguuucgGGCCgGCGGGUc -3'
miRNA:   3'- gaCCCGG-UGGCCGaa-----------CUGGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 151673 0.68 0.610038
Target:  5'- -gGGGCUugCGGUuuUUG-UCCGCGGGc -3'
miRNA:   3'- gaCCCGGugGCCG--AACuGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 54433 0.66 0.751483
Target:  5'- aCUGcuGCCGCCGcuGCUUGGgCCGaCGGGg -3'
miRNA:   3'- -GACc-CGGUGGC--CGAACUgGGC-GUCCa -5'
13992 3' -62.3 NC_003521.1 + 36695 0.73 0.328628
Target:  5'- -cGGGCU-CCGGCgccUGGCCCgaGCAGGUg -3'
miRNA:   3'- gaCCCGGuGGCCGa--ACUGGG--CGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 102370 0.72 0.38787
Target:  5'- gUGGcGCCGCCGGCgaUGcACgCGCGGGg -3'
miRNA:   3'- gACC-CGGUGGCCGa-AC-UGgGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 62831 0.71 0.436675
Target:  5'- aUGGGCaugGCCcGCUcucUGACCCGgCAGGUg -3'
miRNA:   3'- gACCCGg--UGGcCGA---ACUGGGC-GUCCA- -5'
13992 3' -62.3 NC_003521.1 + 212495 0.71 0.436675
Target:  5'- --cGGCCACCGGCgg--UCCGCAGGc -3'
miRNA:   3'- gacCCGGUGGCCGaacuGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 113852 0.7 0.497807
Target:  5'- -gGGGCgGCCGGCgacGACggCGCGGGUu -3'
miRNA:   3'- gaCCCGgUGGCCGaa-CUGg-GCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 188241 0.68 0.590931
Target:  5'- -cGGGCCACCaGCU--GCCCGCGc-- -3'
miRNA:   3'- gaCCCGGUGGcCGAacUGGGCGUcca -5'
13992 3' -62.3 NC_003521.1 + 240390 0.69 0.54372
Target:  5'- gCUGGcuuaCCGCCGGCUUGGCCuCGcCAGc- -3'
miRNA:   3'- -GACCc---GGUGGCCGAACUGG-GC-GUCca -5'
13992 3' -62.3 NC_003521.1 + 127490 0.7 0.479926
Target:  5'- cCUGGaaGCCccCCGGCgucuUGGCCCaGCAGGUc -3'
miRNA:   3'- -GACC--CGGu-GGCCGa---ACUGGG-CGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 174057 0.79 0.15146
Target:  5'- uCUGGGCCGgCGGCaucACCCGCGGGa -3'
miRNA:   3'- -GACCCGGUgGCCGaacUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 87745 0.69 0.553077
Target:  5'- gUGGGCC-CCGGCccgGGCCCcgGCGGcGg -3'
miRNA:   3'- gACCCGGuGGCCGaa-CUGGG--CGUC-Ca -5'
13992 3' -62.3 NC_003521.1 + 38632 0.74 0.2825
Target:  5'- -aGaGGCgCGCCGGCUgggUGuCCCGCGGGUc -3'
miRNA:   3'- gaC-CCG-GUGGCCGA---ACuGGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 89170 0.71 0.462365
Target:  5'- gCUGGGCCGUgGGCcUGGCCCuGCuGGa -3'
miRNA:   3'- -GACCCGGUGgCCGaACUGGG-CGuCCa -5'
13992 3' -62.3 NC_003521.1 + 206358 0.69 0.57193
Target:  5'- gCUGcuGGCCugCGGCgacGACCCcCAGGc -3'
miRNA:   3'- -GAC--CCGGugGCCGaa-CUGGGcGUCCa -5'
13992 3' -62.3 NC_003521.1 + 240635 0.68 0.594745
Target:  5'- -cGGGCCgGCCGGUcggacguguuucgGGCCgGCGGGUc -3'
miRNA:   3'- gaCCCGG-UGGCCGaa-----------CUGGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 95917 0.73 0.32171
Target:  5'- cCUcGGCCACCGGCaugccgugGGCCCGCAGc- -3'
miRNA:   3'- -GAcCCGGUGGCCGaa------CUGGGCGUCca -5'
13992 3' -62.3 NC_003521.1 + 92395 0.72 0.38787
Target:  5'- cCUGGaGCCGCCGGCgcgGccGCCCGCAccauGGc -3'
miRNA:   3'- -GACC-CGGUGGCCGaa-C--UGGGCGU----CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.