miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 3' -56.7 NC_003521.1 + 196192 1.07 0.004392
Target:  5'- aCACCCACAGGCGCAUCAUCUGCAGCUc -3'
miRNA:   3'- -GUGGGUGUCCGCGUAGUAGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 234137 0.79 0.301658
Target:  5'- gCGCUCGCGGGCGCAggccCUGCAGCa -3'
miRNA:   3'- -GUGGGUGUCCGCGUaguaGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 122652 0.77 0.36034
Target:  5'- uGCCgGCGGGCGU--CGUCUGCGGCg -3'
miRNA:   3'- gUGGgUGUCCGCGuaGUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 39100 0.76 0.417865
Target:  5'- uCACCCAgGguuGGCGCAgucguccgggCGUCUGCAGCg -3'
miRNA:   3'- -GUGGGUgU---CCGCGUa---------GUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 239328 0.76 0.417866
Target:  5'- uCACCCAgGguuGGCGCAgucguccgggCGUCUGCAGCg -3'
miRNA:   3'- -GUGGGUgU---CCGCGUa---------GUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 140083 0.75 0.462218
Target:  5'- gGCCCAgcucgGGGUGCAUCAUCUGgUAGCg -3'
miRNA:   3'- gUGGGUg----UCCGCGUAGUAGAC-GUCGa -5'
13993 3' -56.7 NC_003521.1 + 181316 0.75 0.480642
Target:  5'- cCGCCCGCgggccaGGGCGcCGUCugguUCUGUAGCUg -3'
miRNA:   3'- -GUGGGUG------UCCGC-GUAGu---AGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 224807 0.75 0.489988
Target:  5'- gACgCGCGuGGCGUAgggCGUCUGCGGCUg -3'
miRNA:   3'- gUGgGUGU-CCGCGUa--GUAGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 141955 0.74 0.508925
Target:  5'- gCGCCCACcugcuGGGCgacgaGCGUCAggagCUGCAGCg -3'
miRNA:   3'- -GUGGGUG-----UCCG-----CGUAGUa---GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 130853 0.73 0.587289
Target:  5'- cCGCCCuacuGCAGGCGCAggacuUCAUgaccgugugcCUGCGGCg -3'
miRNA:   3'- -GUGGG----UGUCCGCGU-----AGUA----------GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 152056 0.73 0.607314
Target:  5'- uCACCCGCAGGUcCGUCAgCUuCAGCUg -3'
miRNA:   3'- -GUGGGUGUCCGcGUAGUaGAcGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 87201 0.72 0.617356
Target:  5'- gCACCCGCuGGCGCAggagCUGCugAGCg -3'
miRNA:   3'- -GUGGGUGuCCGCGUaguaGACG--UCGa -5'
13993 3' -56.7 NC_003521.1 + 112757 0.72 0.627409
Target:  5'- aGCCCAUGGGCGg--CAUCgGCGGCg -3'
miRNA:   3'- gUGGGUGUCCGCguaGUAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 96595 0.72 0.636461
Target:  5'- gCGCCCaugaugaGCAGGCagGCGUCGgcgcacugCUGCAGCUu -3'
miRNA:   3'- -GUGGG-------UGUCCG--CGUAGUa-------GACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 92356 0.71 0.667581
Target:  5'- gACCCGCGGGCuuuuCGUCAUCaGCAcGCa -3'
miRNA:   3'- gUGGGUGUCCGc---GUAGUAGaCGU-CGa -5'
13993 3' -56.7 NC_003521.1 + 11765 0.71 0.667581
Target:  5'- uCGCCCugGGGacgGC-UCAUCUGCuGCg -3'
miRNA:   3'- -GUGGGugUCCg--CGuAGUAGACGuCGa -5'
13993 3' -56.7 NC_003521.1 + 17006 0.71 0.667581
Target:  5'- gCGCCCGCGguggcggcGGCGCAggcccgUCGUCUgGCGGCc -3'
miRNA:   3'- -GUGGGUGU--------CCGCGU------AGUAGA-CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 53376 0.71 0.667581
Target:  5'- cCGCUgACGcGGCGCAcCAgcuUCUGCAGCUc -3'
miRNA:   3'- -GUGGgUGU-CCGCGUaGU---AGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 144018 0.71 0.687532
Target:  5'- aACCCACAcGCGCGcuUCcccgucuccgGUCUGCGGCg -3'
miRNA:   3'- gUGGGUGUcCGCGU--AG----------UAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 166714 0.71 0.687532
Target:  5'- gCGCCCAUGGGCGUcgCgcaGUCgcGCAGCa -3'
miRNA:   3'- -GUGGGUGUCCGCGuaG---UAGa-CGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.