miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 3' -56.7 NC_003521.1 + 167148 0.7 0.773199
Target:  5'- gUACUCGCAGGUgcugauguugaugGCGUCA-CUGCGGUUa -3'
miRNA:   3'- -GUGGGUGUCCG-------------CGUAGUaGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 127397 0.7 0.736483
Target:  5'- gCGgCCACAGGCG-GUgGUCgUGCAGCg -3'
miRNA:   3'- -GUgGGUGUCCGCgUAgUAG-ACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 64376 0.7 0.736483
Target:  5'- uGCCCG-AGGUGCGggcgCGUCUGCAGa- -3'
miRNA:   3'- gUGGGUgUCCGCGUa---GUAGACGUCga -5'
13993 3' -56.7 NC_003521.1 + 30275 0.7 0.745093
Target:  5'- gACCCugGCGGGCGCGcuccacgUCGUCgaaGUAGCUc -3'
miRNA:   3'- gUGGG--UGUCCGCGU-------AGUAGa--CGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 61145 0.7 0.746045
Target:  5'- gACCUGCuGGUGCAgcUCAUgCUGCAGUc -3'
miRNA:   3'- gUGGGUGuCCGCGU--AGUA-GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 72697 0.7 0.746045
Target:  5'- cCACCCAC-GGCGCuGUCGUCcuCGGCg -3'
miRNA:   3'- -GUGGGUGuCCGCG-UAGUAGacGUCGa -5'
13993 3' -56.7 NC_003521.1 + 66154 0.7 0.761141
Target:  5'- gCACCCGCAGcgcGCGCAgcaaCAgauguacgaaacgCUGCAGCa -3'
miRNA:   3'- -GUGGGUGUC---CGCGUa---GUa------------GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 52367 0.7 0.763008
Target:  5'- aGCUCGgAGGCGCGUCAUCcugaccgccgucGCGGCc -3'
miRNA:   3'- gUGGGUgUCCGCGUAGUAGa-----------CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 127150 0.7 0.764872
Target:  5'- aGCCCGCAGGCGCgguuguugGUCAUg-GcCGGCa -3'
miRNA:   3'- gUGGGUGUCCGCG--------UAGUAgaC-GUCGa -5'
13993 3' -56.7 NC_003521.1 + 195617 0.7 0.726833
Target:  5'- gGCCCGCcagcuGGuCGCGUUG-CUGCAGCUc -3'
miRNA:   3'- gUGGGUGu----CC-GCGUAGUaGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 165791 0.71 0.717104
Target:  5'- aGCCCGCuGGCGCugcCGUC-GCAGUa -3'
miRNA:   3'- gUGGGUGuCCGCGua-GUAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 84662 0.71 0.697445
Target:  5'- uGCCgCACAGGCGUcgCAgcagCgccaGCAGCUg -3'
miRNA:   3'- gUGG-GUGUCCGCGuaGUa---Ga---CGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 239328 0.76 0.417866
Target:  5'- uCACCCAgGguuGGCGCAgucguccgggCGUCUGCAGCg -3'
miRNA:   3'- -GUGGGUgU---CCGCGUa---------GUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 140083 0.75 0.462218
Target:  5'- gGCCCAgcucgGGGUGCAUCAUCUGgUAGCg -3'
miRNA:   3'- gUGGGUg----UCCGCGUAGUAGAC-GUCGa -5'
13993 3' -56.7 NC_003521.1 + 181316 0.75 0.480642
Target:  5'- cCGCCCGCgggccaGGGCGcCGUCugguUCUGUAGCUg -3'
miRNA:   3'- -GUGGGUG------UCCGC-GUAGu---AGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 224807 0.75 0.489988
Target:  5'- gACgCGCGuGGCGUAgggCGUCUGCGGCUg -3'
miRNA:   3'- gUGgGUGU-CCGCGUa--GUAGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 141955 0.74 0.508925
Target:  5'- gCGCCCACcugcuGGGCgacgaGCGUCAggagCUGCAGCg -3'
miRNA:   3'- -GUGGGUG-----UCCG-----CGUAGUa---GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 152056 0.73 0.607314
Target:  5'- uCACCCGCAGGUcCGUCAgCUuCAGCUg -3'
miRNA:   3'- -GUGGGUGUCCGcGUAGUaGAcGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 53376 0.71 0.667581
Target:  5'- cCGCUgACGcGGCGCAcCAgcuUCUGCAGCUc -3'
miRNA:   3'- -GUGGgUGU-CCGCGUaGU---AGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 144018 0.71 0.687532
Target:  5'- aACCCACAcGCGCGcuUCcccgucuccgGUCUGCGGCg -3'
miRNA:   3'- gUGGGUGUcCGCGU--AG----------UAGACGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.