miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 3' -56.7 NC_003521.1 + 6165 0.66 0.917995
Target:  5'- aACCCcuggcggggcCAGGCGCAgaacgagacgAUCUGCGGCa -3'
miRNA:   3'- gUGGGu---------GUCCGCGUag--------UAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 7457 0.67 0.886448
Target:  5'- gCACCaCGCGGGaCGUGcgaaaagcccguuUCAUCUGCAcGCg -3'
miRNA:   3'- -GUGG-GUGUCC-GCGU-------------AGUAGACGU-CGa -5'
13993 3' -56.7 NC_003521.1 + 11765 0.71 0.667581
Target:  5'- uCGCCCugGGGacgGC-UCAUCUGCuGCg -3'
miRNA:   3'- -GUGGGugUCCg--CGuAGUAGACGuCGa -5'
13993 3' -56.7 NC_003521.1 + 17006 0.71 0.667581
Target:  5'- gCGCCCGCGguggcggcGGCGCAggcccgUCGUCUgGCGGCc -3'
miRNA:   3'- -GUGGGUGU--------CCGCGU------AGUAGA-CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 27272 0.67 0.899516
Target:  5'- gGCCCACgaaggccAGGCGgGUC-UC-GCAGCa -3'
miRNA:   3'- gUGGGUG-------UCCGCgUAGuAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 27532 0.66 0.932292
Target:  5'- gCGCCCACGguGGCGUagacggucuccaccGUCGUCcggGCGGUc -3'
miRNA:   3'- -GUGGGUGU--CCGCG--------------UAGUAGa--CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 30275 0.7 0.745093
Target:  5'- gACCCugGCGGGCGCGcuccacgUCGUCgaaGUAGCUc -3'
miRNA:   3'- gUGGG--UGUCCGCGU-------AGUAGa--CGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 30836 0.67 0.900146
Target:  5'- aACuCCACGGGCGCcuugCGaCgGCAGCg -3'
miRNA:   3'- gUG-GGUGUCCGCGua--GUaGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 31283 0.7 0.764871
Target:  5'- cCACCCcgcCGGGCGCAUaaCcgCgGCAGCg -3'
miRNA:   3'- -GUGGGu--GUCCGCGUA--GuaGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 39100 0.76 0.417865
Target:  5'- uCACCCAgGguuGGCGCAgucguccgggCGUCUGCAGCg -3'
miRNA:   3'- -GUGGGUgU---CCGCGUa---------GUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 40238 0.69 0.792236
Target:  5'- gCGgUCGCAGGCGCcgCcUCcgGCAGCUc -3'
miRNA:   3'- -GUgGGUGUCCGCGuaGuAGa-CGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 42647 0.67 0.906323
Target:  5'- gCAgCCGCgguguAGGCGUA-CGUCUGCuGCa -3'
miRNA:   3'- -GUgGGUG-----UCCGCGUaGUAGACGuCGa -5'
13993 3' -56.7 NC_003521.1 + 52367 0.7 0.763008
Target:  5'- aGCUCGgAGGCGCGUCAUCcugaccgccgucGCGGCc -3'
miRNA:   3'- gUGGGUgUCCGCGUAGUAGa-----------CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 53376 0.71 0.667581
Target:  5'- cCGCUgACGcGGCGCAcCAgcuUCUGCAGCUc -3'
miRNA:   3'- -GUGGgUGU-CCGCGUaGU---AGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 55940 0.67 0.906323
Target:  5'- aGCCC--AGGCGCAUgagcacCGUgUGCAGCc -3'
miRNA:   3'- gUGGGugUCCGCGUA------GUAgACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 58875 0.67 0.906323
Target:  5'- gGCCCACGagagguGGCGCGgcgaGUC-GCAGCc -3'
miRNA:   3'- gUGGGUGU------CCGCGUag--UAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 59467 0.68 0.858504
Target:  5'- -gUCCGaucCGGGCGCGacaaUCAcgCUGCAGCUa -3'
miRNA:   3'- guGGGU---GUCCGCGU----AGUa-GACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 59520 0.7 0.774118
Target:  5'- gGCCCGCGGGCGgCcugagcuUCucuucccggCUGCAGCUg -3'
miRNA:   3'- gUGGGUGUCCGC-Gu------AGua-------GACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 61145 0.7 0.746045
Target:  5'- gACCUGCuGGUGCAgcUCAUgCUGCAGUc -3'
miRNA:   3'- gUGGGUGuCCGCGU--AGUA-GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 63355 0.66 0.912273
Target:  5'- -cUCCACGGccGCGCAgacCGUCaGCAGCUu -3'
miRNA:   3'- guGGGUGUC--CGCGUa--GUAGaCGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.