Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13993 | 5' | -58 | NC_003521.1 | + | 137297 | 0.73 | 0.535158 |
Target: 5'- -gAGCUGCGGGUGgCGCggcugcuGCGCggcGACCc -3' miRNA: 3'- cgUCGACGUCCACaGCG-------CGCGa--CUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 119084 | 0.73 | 0.536108 |
Target: 5'- -gGGCaaGCAGGUGUggcagGCGCGCcUGACCg -3' miRNA: 3'- cgUCGa-CGUCCACAg----CGCGCG-ACUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 169457 | 0.73 | 0.536108 |
Target: 5'- gGCGGCgGCGGGUucGUCGCcagGCGCgucgucguUGGCCa -3' miRNA: 3'- -CGUCGaCGUCCA--CAGCG---CGCG--------ACUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 211039 | 0.73 | 0.536108 |
Target: 5'- aCAGCUGCAGGUGaaaUG-GCUGACCu -3' miRNA: 3'- cGUCGACGUCCACagcGCgCGACUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 46378 | 0.73 | 0.545645 |
Target: 5'- cGCGGCUGUgaggggcgcgGGGUGcgugggGCGCGCgGGCCa -3' miRNA: 3'- -CGUCGACG----------UCCACag----CGCGCGaCUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 181346 | 0.73 | 0.545645 |
Target: 5'- uGUAGCUGCAGcGUGaUUGuCGCGCccgGAUCg -3' miRNA: 3'- -CGUCGACGUC-CAC-AGC-GCGCGa--CUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 88170 | 0.73 | 0.555237 |
Target: 5'- cCAGCUcGCAGGUGaCgGCGuCGCUGAgCa -3' miRNA: 3'- cGUCGA-CGUCCACaG-CGC-GCGACUgG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 28381 | 0.73 | 0.555237 |
Target: 5'- -uGGCgugGCAcGUGUCGCGaCGCcUGGCCa -3' miRNA: 3'- cgUCGa--CGUcCACAGCGC-GCG-ACUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 177755 | 0.73 | 0.555237 |
Target: 5'- cGCAGCUGUAcGGgGUCGCGgucguCGCcagGGCCg -3' miRNA: 3'- -CGUCGACGU-CCaCAGCGC-----GCGa--CUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 37456 | 0.73 | 0.555237 |
Target: 5'- --cGCUGUGGGc-UCGCGCGCgGGCCa -3' miRNA: 3'- cguCGACGUCCacAGCGCGCGaCUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 90836 | 0.73 | 0.57359 |
Target: 5'- --uGCgGCGGGUG-CGCGCcgcccgugcugcuGCUGACCa -3' miRNA: 3'- cguCGaCGUCCACaGCGCG-------------CGACUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 40422 | 0.73 | 0.57456 |
Target: 5'- cGguGCUGUccaccacggccAGGUGcUCGCGCGCUcuaGCCc -3' miRNA: 3'- -CguCGACG-----------UCCAC-AGCGCGCGAc--UGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 31705 | 0.72 | 0.584281 |
Target: 5'- gGCGGCgGCAGcauGUG-CGCGUGCUGggacGCCg -3' miRNA: 3'- -CGUCGaCGUC---CACaGCGCGCGAC----UGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 99876 | 0.72 | 0.594033 |
Target: 5'- gGCGGCcaccgucuccaUGUAGGgGUCGUGCggGUUGACCg -3' miRNA: 3'- -CGUCG-----------ACGUCCaCAGCGCG--CGACUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 128876 | 0.72 | 0.597942 |
Target: 5'- aGCAGCuucugcuugaagcucUGCAGGaUGUUGCuGCGCUGGa- -3' miRNA: 3'- -CGUCG---------------ACGUCC-ACAGCG-CGCGACUgg -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 87622 | 0.72 | 0.603812 |
Target: 5'- uGUGGCaGCAGGUGcCGC-CGCaGGCCu -3' miRNA: 3'- -CGUCGaCGUCCACaGCGcGCGaCUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 39030 | 0.72 | 0.613609 |
Target: 5'- aGCAGCgacgGCGGGUGUgGCGCcgagGCgaacGGCUc -3' miRNA: 3'- -CGUCGa---CGUCCACAgCGCG----CGa---CUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 239258 | 0.72 | 0.613609 |
Target: 5'- aGCAGCgacgGCGGGUGUgGCGCcgagGCgaacGGCUc -3' miRNA: 3'- -CGUCGa---CGUCCACAgCGCG----CGa---CUGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 144003 | 0.72 | 0.62342 |
Target: 5'- -aAGCUGguGGUGUgcaacccacaCGCGCGCUucCCc -3' miRNA: 3'- cgUCGACguCCACA----------GCGCGCGAcuGG- -5' |
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13993 | 5' | -58 | NC_003521.1 | + | 35751 | 0.72 | 0.62342 |
Target: 5'- gGUAGggGCAGuGUGUCGgGCaacCUGACCa -3' miRNA: 3'- -CGUCgaCGUC-CACAGCgCGc--GACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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