miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13997 3' -52.3 NC_003521.1 + 239090 0.71 0.905686
Target:  5'- uGCGgucgcgGGAGgaACGCgaGGGGAGGGGACc -3'
miRNA:   3'- -UGCaa----CCUC--UGUGgaCCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 235842 0.67 0.98998
Target:  5'- cGCGggaUGGugaGGACACCacacggGGAGGGAGG-Ca -3'
miRNA:   3'- -UGCa--ACC---UCUGUGGa-----CCUUUCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 212926 0.66 0.995658
Target:  5'- ----aGGAGGCGCUgu--AAGAGGACa -3'
miRNA:   3'- ugcaaCCUCUGUGGaccuUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 200883 0.68 0.979669
Target:  5'- uACGcugcUGGAG-CugCUGGc-GGAGGACa -3'
miRNA:   3'- -UGCa---ACCUCuGugGACCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 193504 1.11 0.00785
Target:  5'- gACGUUGGAGACACCUGGAAAGAGGACg -3'
miRNA:   3'- -UGCAACCUCUGUGGACCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 187180 0.67 0.987146
Target:  5'- aACGUgcGGAGACggcccGCCUGcAucGGGGACa -3'
miRNA:   3'- -UGCAa-CCUCUG-----UGGACcUuuCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 186912 0.67 0.985515
Target:  5'- gACGUccaagGGGGGCGCCggUGGcgGGGGcGGCg -3'
miRNA:   3'- -UGCAa----CCUCUGUGG--ACCuuUCUC-CUG- -5'
13997 3' -52.3 NC_003521.1 + 177977 0.66 0.994884
Target:  5'- -aGgcGGGGcACACCUGGGgcggugcGGGuAGGGCg -3'
miRNA:   3'- ugCaaCCUC-UGUGGACCU-------UUC-UCCUG- -5'
13997 3' -52.3 NC_003521.1 + 173332 0.67 0.985515
Target:  5'- gACGaggucgGGAGugAcggaCCUcucgGGAAGGAGGACg -3'
miRNA:   3'- -UGCaa----CCUCugU----GGA----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 172434 0.66 0.9923
Target:  5'- gGCGgaGGAGGaagacgACgaGGAGAGGGGAg -3'
miRNA:   3'- -UGCaaCCUCUg-----UGgaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 169656 0.67 0.9912
Target:  5'- ---cUGGAGACGCCgaaGAGgcAGAGGAg -3'
miRNA:   3'- ugcaACCUCUGUGGac-CUU--UCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 169213 0.69 0.955771
Target:  5'- gACGgaGGAGACAacaauCCcaGAAAGAGGACc -3'
miRNA:   3'- -UGCaaCCUCUGU-----GGacCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 169170 0.69 0.955771
Target:  5'- gAUGUUGGAGuACaugacaugACCcGGGAGGuGGACg -3'
miRNA:   3'- -UGCAACCUC-UG--------UGGaCCUUUCuCCUG- -5'
13997 3' -52.3 NC_003521.1 + 164801 0.66 0.994171
Target:  5'- uCGUcGGGGACGaucccggagcgcCCgcggGGGAGGAGGAa -3'
miRNA:   3'- uGCAaCCUCUGU------------GGa---CCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 156678 0.66 0.994732
Target:  5'- gACG-UGGAGACAUCUucgcgcucggGGAAaaggugcuggccggGGAGGAg -3'
miRNA:   3'- -UGCaACCUCUGUGGA----------CCUU--------------UCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 150024 0.68 0.977376
Target:  5'- -aGggGGGGGgGgCUGGGGAGGGGGg -3'
miRNA:   3'- ugCaaCCUCUgUgGACCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 138604 0.66 0.993288
Target:  5'- -aGggGGAGAUGC--GGAGGGAGGAa -3'
miRNA:   3'- ugCaaCCUCUGUGgaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 135260 0.68 0.974898
Target:  5'- cACGgcGGcGGACGCCgacGAcgAGGAGGACg -3'
miRNA:   3'- -UGCaaCC-UCUGUGGac-CU--UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 129870 0.69 0.959495
Target:  5'- gACGagUGGGuGACgGCCgGGGAGGAGGAg -3'
miRNA:   3'- -UGCa-ACCU-CUG-UGGaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 126753 0.68 0.983731
Target:  5'- uGCGUUGGGGACgacgaucuucGCCacguucaggcUGGucGAGGAGGAg -3'
miRNA:   3'- -UGCAACCUCUG----------UGG----------ACC--UUUCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.