Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 111200 | 0.67 | 0.9912 |
Target: 5'- gACGgUGGGcugggcgauGGCGCC-GGAAAGuGGGCg -3' miRNA: 3'- -UGCaACCU---------CUGUGGaCCUUUCuCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 98228 | 0.67 | 0.987146 |
Target: 5'- gGCGUgGGAGGCGg--GGAGGcGGGGGCg -3' miRNA: 3'- -UGCAaCCUCUGUggaCCUUU-CUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 187180 | 0.67 | 0.987146 |
Target: 5'- aACGUgcGGAGACggcccGCCUGcAucGGGGACa -3' miRNA: 3'- -UGCAa-CCUCUG-----UGGACcUuuCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 89657 | 0.67 | 0.98998 |
Target: 5'- ----aGGAcGGCACagaggaaGGAGAGAGGACa -3' miRNA: 3'- ugcaaCCU-CUGUGga-----CCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 169656 | 0.67 | 0.9912 |
Target: 5'- ---cUGGAGACGCCgaaGAGgcAGAGGAg -3' miRNA: 3'- ugcaACCUCUGUGGac-CUU--UCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 65344 | 0.67 | 0.986989 |
Target: 5'- ---aUGGAGucauCAUCUGGAAAGAgaaagauGGACu -3' miRNA: 3'- ugcaACCUCu---GUGGACCUUUCU-------CCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 235842 | 0.67 | 0.98998 |
Target: 5'- cGCGggaUGGugaGGACACCacacggGGAGGGAGG-Ca -3' miRNA: 3'- -UGCa--ACC---UCUGUGGa-----CCUUUCUCCuG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 173332 | 0.67 | 0.985515 |
Target: 5'- gACGaggucgGGAGugAcggaCCUcucgGGAAGGAGGACg -3' miRNA: 3'- -UGCaa----CCUCugU----GGA----CCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 7148 | 0.67 | 0.985515 |
Target: 5'- cGCGgaGGAcGACgACgaGGAA-GAGGACa -3' miRNA: 3'- -UGCaaCCU-CUG-UGgaCCUUuCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 150024 | 0.68 | 0.977376 |
Target: 5'- -aGggGGGGGgGgCUGGGGAGGGGGg -3' miRNA: 3'- ugCaaCCUCUgUgGACCUUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 86550 | 0.68 | 0.977376 |
Target: 5'- aGCGUUGGAGcAgACCuucugccagaacUGGAGGcAGGGCa -3' miRNA: 3'- -UGCAACCUC-UgUGG------------ACCUUUcUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 135260 | 0.68 | 0.974898 |
Target: 5'- cACGgcGGcGGACGCCgacGAcgAGGAGGACg -3' miRNA: 3'- -UGCaaCC-UCUGUGGac-CU--UUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 126753 | 0.68 | 0.983731 |
Target: 5'- uGCGUUGGGGACgacgaucuucGCCacguucaggcUGGucGAGGAGGAg -3' miRNA: 3'- -UGCAACCUCUG----------UGG----------ACC--UUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 77666 | 0.68 | 0.983731 |
Target: 5'- cCGUcgGGAGACAgCaGGccGGGGGGCa -3' miRNA: 3'- uGCAa-CCUCUGUgGaCCuuUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 65225 | 0.68 | 0.983731 |
Target: 5'- gACGcaGGAGAUacuggccgGCCUGGAuccgcgcgcgcAAGAGGAa -3' miRNA: 3'- -UGCaaCCUCUG--------UGGACCU-----------UUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 4233 | 0.68 | 0.974898 |
Target: 5'- cCGggaGGAGG-ACCgagacgGGGAGGAGGACg -3' miRNA: 3'- uGCaa-CCUCUgUGGa-----CCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 200883 | 0.68 | 0.979669 |
Target: 5'- uACGcugcUGGAG-CugCUGGc-GGAGGACa -3' miRNA: 3'- -UGCa---ACCUCuGugGACCuuUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 15529 | 0.69 | 0.962998 |
Target: 5'- gGCGgcaugUGGcGaACGCgCUGGGAAGAGGGg -3' miRNA: 3'- -UGCa----ACCuC-UGUG-GACCUUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 169170 | 0.69 | 0.955771 |
Target: 5'- gAUGUUGGAGuACaugacaugACCcGGGAGGuGGACg -3' miRNA: 3'- -UGCAACCUC-UG--------UGGaCCUUUCuCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 13831 | 0.69 | 0.967538 |
Target: 5'- cCGUcGGAaaGCACCUGGAAugugacgaccggaggGGAGGAUg -3' miRNA: 3'- uGCAaCCUc-UGUGGACCUU---------------UCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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