Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 169170 | 0.69 | 0.955771 |
Target: 5'- gAUGUUGGAGuACaugacaugACCcGGGAGGuGGACg -3' miRNA: 3'- -UGCAACCUC-UG--------UGGaCCUUUCuCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 129870 | 0.69 | 0.959495 |
Target: 5'- gACGagUGGGuGACgGCCgGGGAGGAGGAg -3' miRNA: 3'- -UGCa-ACCU-CUG-UGGaCCUUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 13831 | 0.69 | 0.967538 |
Target: 5'- cCGUcGGAaaGCACCUGGAAugugacgaccggaggGGAGGAUg -3' miRNA: 3'- uGCAaCCUc-UGUGGACCUU---------------UCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 4233 | 0.68 | 0.974898 |
Target: 5'- cCGggaGGAGG-ACCgagacgGGGAGGAGGACg -3' miRNA: 3'- uGCaa-CCUCUgUGGa-----CCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 86550 | 0.68 | 0.977376 |
Target: 5'- aGCGUUGGAGcAgACCuucugccagaacUGGAGGcAGGGCa -3' miRNA: 3'- -UGCAACCUC-UgUGG------------ACCUUUcUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 135260 | 0.68 | 0.974898 |
Target: 5'- cACGgcGGcGGACGCCgacGAcgAGGAGGACg -3' miRNA: 3'- -UGCaaCC-UCUGUGGac-CU--UUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 150024 | 0.68 | 0.977376 |
Target: 5'- -aGggGGGGGgGgCUGGGGAGGGGGg -3' miRNA: 3'- ugCaaCCUCUgUgGACCUUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 200883 | 0.68 | 0.979669 |
Target: 5'- uACGcugcUGGAG-CugCUGGc-GGAGGACa -3' miRNA: 3'- -UGCa---ACCUCuGugGACCuuUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 126753 | 0.68 | 0.983731 |
Target: 5'- uGCGUUGGGGACgacgaucuucGCCacguucaggcUGGucGAGGAGGAg -3' miRNA: 3'- -UGCAACCUCUG----------UGG----------ACC--UUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 186912 | 0.67 | 0.985515 |
Target: 5'- gACGUccaagGGGGGCGCCggUGGcgGGGGcGGCg -3' miRNA: 3'- -UGCAa----CCUCUGUGG--ACCuuUCUC-CUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 90871 | 0.67 | 0.985515 |
Target: 5'- cACGgccgagGGGGACg---GGGAGGGGGACg -3' miRNA: 3'- -UGCaa----CCUCUGuggaCCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 15529 | 0.69 | 0.962998 |
Target: 5'- gGCGgcaugUGGcGaACGCgCUGGGAAGAGGGg -3' miRNA: 3'- -UGCa----ACCuC-UGUG-GACCUUUCUCCUg -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 77236 | 0.7 | 0.951821 |
Target: 5'- uACGggGGAcgacagGGCACacacggggGGAAGGGGGACa -3' miRNA: 3'- -UGCaaCCU------CUGUGga------CCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 84774 | 0.7 | 0.938579 |
Target: 5'- gACGUUGuuGGCACCgccgaagcaGAGGGAGGGCa -3' miRNA: 3'- -UGCAACcuCUGUGGac-------CUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 48551 | 0.7 | 0.933693 |
Target: 5'- aACGgcgUGGAGACGCCgcUGGuGAAGGuGACg -3' miRNA: 3'- -UGCa--ACCUCUGUGG--ACC-UUUCUcCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 239090 | 0.71 | 0.905686 |
Target: 5'- uGCGgucgcgGGAGgaACGCgaGGGGAGGGGACc -3' miRNA: 3'- -UGCaa----CCUC--UGUGgaCCUUUCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 72121 | 0.71 | 0.905686 |
Target: 5'- gGCGgUGGAGAuuCACCU-GAccGAGGACg -3' miRNA: 3'- -UGCaACCUCU--GUGGAcCUuuCUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 125700 | 0.72 | 0.892832 |
Target: 5'- gACGUagUGGAGACGCCggcGGucacgacGGGGGCg -3' miRNA: 3'- -UGCA--ACCUCUGUGGa--CCuuu----CUCCUG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 49642 | 0.72 | 0.892832 |
Target: 5'- gACGagGGAGACgaggaacaggAUCUGGAGAGGGGcCg -3' miRNA: 3'- -UGCaaCCUCUG----------UGGACCUUUCUCCuG- -5' |
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13997 | 3' | -52.3 | NC_003521.1 | + | 40972 | 0.66 | 0.995658 |
Target: 5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3' miRNA: 3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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