miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13997 3' -52.3 NC_003521.1 + 98228 0.67 0.987146
Target:  5'- gGCGUgGGAGGCGg--GGAGGcGGGGGCg -3'
miRNA:   3'- -UGCAaCCUCUGUggaCCUUU-CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 187180 0.67 0.987146
Target:  5'- aACGUgcGGAGACggcccGCCUGcAucGGGGACa -3'
miRNA:   3'- -UGCAa-CCUCUG-----UGGACcUuuCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 177977 0.66 0.994884
Target:  5'- -aGgcGGGGcACACCUGGGgcggugcGGGuAGGGCg -3'
miRNA:   3'- ugCaaCCUC-UGUGGACCU-------UUC-UCCUG- -5'
13997 3' -52.3 NC_003521.1 + 40972 0.66 0.995658
Target:  5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3'
miRNA:   3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 89657 0.67 0.98998
Target:  5'- ----aGGAcGGCACagaggaaGGAGAGAGGACa -3'
miRNA:   3'- ugcaaCCU-CUGUGga-----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 172434 0.66 0.9923
Target:  5'- gGCGgaGGAGGaagacgACgaGGAGAGGGGAg -3'
miRNA:   3'- -UGCaaCCUCUg-----UGgaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 86316 0.66 0.994959
Target:  5'- -gGUUGGccgccaGCACCUGGAugcuGGAGGuCu -3'
miRNA:   3'- ugCAACCuc----UGUGGACCUu---UCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 48274 0.67 0.987146
Target:  5'- -aGagGGAGAagaCgGGAGAGAGGACg -3'
miRNA:   3'- ugCaaCCUCUgugGaCCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 13651 0.66 0.9923
Target:  5'- gGCGgcGGAGGCgggagaagagGCUcGGAGAGGGuGGCg -3'
miRNA:   3'- -UGCaaCCUCUG----------UGGaCCUUUCUC-CUG- -5'
13997 3' -52.3 NC_003521.1 + 169656 0.67 0.9912
Target:  5'- ---cUGGAGACGCCgaaGAGgcAGAGGAg -3'
miRNA:   3'- ugcaACCUCUGUGGac-CUU--UCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 77666 0.68 0.983731
Target:  5'- cCGUcgGGAGACAgCaGGccGGGGGGCa -3'
miRNA:   3'- uGCAa-CCUCUGUgGaCCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 28059 0.78 0.590104
Target:  5'- gGCGggGGAGAgACaggaGGggGGAGGACg -3'
miRNA:   3'- -UGCaaCCUCUgUGga--CCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 34330 0.66 0.994171
Target:  5'- aGCGUUGGAagcGGCGCa-GGgcGGAGGcCg -3'
miRNA:   3'- -UGCAACCU---CUGUGgaCCuuUCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 103080 0.66 0.995658
Target:  5'- gGCGagGGcuGCugCUGGGgaugcgAAGGGGGCg -3'
miRNA:   3'- -UGCaaCCucUGugGACCU------UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 651 0.66 0.995658
Target:  5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3'
miRNA:   3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 169170 0.69 0.955771
Target:  5'- gAUGUUGGAGuACaugacaugACCcGGGAGGuGGACg -3'
miRNA:   3'- -UGCAACCUC-UG--------UGGaCCUUUCuCCUG- -5'
13997 3' -52.3 NC_003521.1 + 112047 0.66 0.995658
Target:  5'- cGCGUacUGc-GACGCCUGcu-GGAGGACg -3'
miRNA:   3'- -UGCA--ACcuCUGUGGACcuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 173332 0.67 0.985515
Target:  5'- gACGaggucgGGAGugAcggaCCUcucgGGAAGGAGGACg -3'
miRNA:   3'- -UGCaa----CCUCugU----GGA----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 7148 0.67 0.985515
Target:  5'- cGCGgaGGAcGACgACgaGGAA-GAGGACa -3'
miRNA:   3'- -UGCaaCCU-CUG-UGgaCCUUuCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 65225 0.68 0.983731
Target:  5'- gACGcaGGAGAUacuggccgGCCUGGAuccgcgcgcgcAAGAGGAa -3'
miRNA:   3'- -UGCaaCCUCUG--------UGGACCU-----------UUCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.